Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1299 ATGGATAGTGATATTCTAAGAACTCATTGGATTGAAGAACCCAAACTCTGTGAAGAAAATCTCCCACCACTACCAACCACATCATGGACCCCCAAAAACGACGACGTTTCATCCTTCAAATCATTTCTCCATGTTAATGACTTGTTCATGAACTCTTCCATAAACCAAAATCAAAGTTTTATGATTCAACATTTCAACCCTTCTTTCACCAATGATTTTGATTTTGGGTCTGAACCCAGTTTTCTCAATTACAATCCCTCTCTTTTCATGGGTTTCAACAATAATACTAACACTCTTGAGCTGAGTTCAAACCCCGAGTTCAATCCAACTCGTCAAGTTCAACTCAGTGATGGGTTTAATCACAACACAATCTGTGTTGTTGGAGAACAATGCCATGCTTCTGGAGCTTCCAATTCCATGTTTTTCAACCAGACTAGTGTTTTTCACCAACTGGGTACTCAGGTTCCGGCTCCGGCGGTTGTGCCGCCGCAGATGCTGGCGGTGTTTCGCCAAGATCCGGTTGAAAAGCTGGGAGCTTTGGAGATAAGGGCCGTGGCACGGCTCATTGCGATGGAGGAGATGGAGAGAAAGAAGAAGATTGGATTGAATGATGATGATTCTGATGATGATGACGACATTGTTGAGATTAATAAGTATGAGGAGAATGGGAACAATTTTGAGGCAAATAATGTTAATGATTGTTGCGAAAAAGGGAAGAAGAAGAAAGGGGCACCGGCGAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAGGCTCAATGATAGGCTTTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGTTTGAATTGTGTCAGATGCCAATACCATTCCGGATATTTGGACACTTATCAAATATGGACAGGGCTTCAATACTCGGGGATGCAATCGAATACTTGATGGATTTGATACAGAAGGTTAATGATCTTCATAATGAGCTGGGGTTAACTCCATCGGGCTCATTTATTACACCTTCTTCAAGCTTTCACCCCGTGACACCCGGTGTGCCTACCCTTCCTTCCCGGGTGAAGGATGAACTATGTCTTAGCTCCTTGGCAACCCCGAAAAGTCGGTCACCTAAGGTTGAGGTTAGGCTAAGAGAAGGGAGAACTATCGATGTCCACATGTTTTGTGCCTGCAAGCCCGGTCTTTTCCTTTCCACGATGACGGCATTGGATAGCCTCGGATTCGATGTTCAGCATGCCGTTATCAGCTGTTTCAATGATTTTGTTTTAGATGTGTACAGAGCTGAGCAATGCAGAGACGGTTTGGATCTTCTCCCGGAGCAGATTAAAACTGTATTGTTAGAGGCCGCCGATTTTCGATGTGAGTGA 1356 0.4432 MDSDILRTHWIEEPKLCEENLPPLPTTSWTPKNDDVSSFKSFLHVNDLFMNSSINQNQSFMIQHFNPSFTNDFDFGSEPSFLNYNPSLFMGFNNNTNTLELSSNPEFNPTRQVQLSDGFNHNTICVVGEQCHASGASNSMFFNQTSVFHQLGTQVPAPAVVPPQMLAVFRQDPVEKLGALEIRAVARLIAMEEMERKKKIGLNDDDSDDDDDIVEINKYEENGNNFEANNVNDCCEKGKKKKGAPAKNLMAERRRRKRLNDRLYMLRSVVPKISKFELCQMPIPFRIFGHLSNMDRASILGDAIEYLMDLIQKVNDLHNELGLTPSGSFITPSSSFHPVTPGVPTLPSRVKDELCLSSLATPKSRSPKVEVRLREGRTIDVHMFCACKPGLFLSTMTALDSLGFDVQHAVISCFNDFVLDVYRAEQCRDGLDLLPEQIKTVLLEAADFRCE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1299 451 Pfam Helix-loop-helix DNA-binding domain 250 310 IPR011598 GO:0046983
Lal12g1299 451 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 35 276 - -
Lal12g1299 451 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 290 448 - -
Lal12g1299 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 310 IPR011598 GO:0046983
Lal12g1299 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 325 IPR036638 GO:0046983
Lal12g1299 451 Gene3D - 235 324 IPR036638 GO:0046983
Lal12g1299 451 SMART finulus 249 316 IPR011598 GO:0046983
Lal12g1299 451 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 290 448 - -
Lal12g1299 451 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 35 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1299 Lal-Chr12 15935532 15940604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1299 66 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 44.675 1.11e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g1299 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1299 - - lang:109353510 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1299 12 15935532 15940604 Lal12g1299 12 15935532 15940604 ECH
Lal12g1299 12 15935532 15940604 Lal24g1205 24 13288408 13293665 LSH