Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1292 ATGCTATCTAAGTCATGTACTATGATTGCAACAATATTTGTTGTTGTTGTTGTTGTTGCACCAATAGTTGTTGGAGTTAATTCATTTTCAGAAGCTGATAAAATAAGCACTTTACCTGGGCAGCCACTAGTTAAGTTCCATCAGTATGCTGGTTATATTACAGTGGATGAGGAACAAGAAAGAGCTTTGTTTTACTACTTTGTTGAATCTGAAGTTGAACCAGCTTCCAAGCCACTAGTTCTATGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAACATGGTCCTTTCAAACCAAGTGAAAGTGGTGTTGTGAAAAATGACTATAGTTGGAACAAAGAGGCAAATATATTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCATATTCTGCTAATAAATCTTTCTATGACTTTGTGACTGATGAAATTACAGCAAAAGATAATCTTGTTTTCCTGAAGCATTGGTTCACTAAATTCCCAGAGTACACAAACAATGACTTCTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTGCCTCAACTTGCACAACTCATTGTTCAAACAAAGACTAAATTCAATCTCAAGGGGATAGCTATAGGGAATCCTCTTCTGGAATTTAACACAGATCTCAACTCTAGAGCTGAGTTTTTATGGTCACATGGACTTATATCCGATTCGACTTTCGAAATCTTCACTAGAGTCTGCAACAATTCCCAAATTAGGAGACAAGTACAAAGTGGGACACTTAGTGCTGTTTGTGCAGGAGTAAATAAACTAGTGACAACAGAAGTTAGTAGATATATTGATTCATATGATGTTACTCTTGATGTCTGTCTTTCATCAGCACATCAACAGGCTTATGTGCTGAATCAACTGACTCAACTGCAAGAGGTGGAGAAAATAGATGTTTGTGTTGAAGATGAAACAAGCACATACTTAAACAGAAAAGATGTGCAGGATGCTCTCCATGCTAAGCTTGTAGGGATCAATAGCTGGTCACTTTGCAGCTACATTCTCAAATATGAAATGCAGAATCTTGAGGTACCAACCATTTCTATTCTAGGCACACTTGTTAAGTCAGGTATCAGAGTTCTAGTATACAGTGGAGATCAAGATTCAGTAATCCCATTACTTGGAACAAGATCCCTTGTAAATGGATTAGCCAAAGAGTATGGACTCAACACAACAGTGTCCTATAGAGCTTGGTTTGAAGGAAGACAGGTAGCTGGATGGACACAGGTATATGGTGACATCTTGTCATTTGCCACCATAAGAGGTGCAGCTCATGAAGCTCCACTTTCACAACCAAAAAGATCCTTAGTGATGCTAAAAGCATTTTTGGAAGGAAAGCCACTTCCATAA 1386 0.3874 MLSKSCTMIATIFVVVVVVAPIVVGVNSFSEADKISTLPGQPLVKFHQYAGYITVDEEQERALFYYFVESEVEPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSESGVVKNDYSWNKEANILYLESPAGVGFSYSANKSFYDFVTDEITAKDNLVFLKHWFTKFPEYTNNDFFITGESYAGHYVPQLAQLIVQTKTKFNLKGIAIGNPLLEFNTDLNSRAEFLWSHGLISDSTFEIFTRVCNNSQIRRQVQSGTLSAVCAGVNKLVTTEVSRYIDSYDVTLDVCLSSAHQQAYVLNQLTQLQEVEKIDVCVEDETSTYLNRKDVQDALHAKLVGINSWSLCSYILKYEMQNLEVPTISILGTLVKSGIRVLVYSGDQDSVIPLLGTRSLVNGLAKEYGLNTTVSYRAWFEGRQVAGWTQVYGDILSFATIRGAAHEAPLSQPKRSLVMLKAFLEGKPLP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1292 461 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Lal12g1292 461 Gene3D alpha/beta hydrolase 29 288 IPR029058 -
Lal12g1292 461 SUPERFAMILY alpha/beta-Hydrolases 38 461 IPR029058 -
Lal12g1292 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Lal12g1292 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Lal12g1292 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Lal12g1292 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 427 440 IPR001563 GO:0004185|GO:0006508
Lal12g1292 461 Pfam Serine carboxypeptidase 40 457 IPR001563 GO:0004185|GO:0006508
Lal12g1292 461 Gene3D - 359 457 - -
Lal12g1292 461 PANTHER CARBOXYPEPTIDASE 15 461 - -
Lal12g1292 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 15 461 IPR001563 GO:0004185|GO:0006508
Lal12g1292 461 Gene3D - 312 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1292 Lal-Chr12 15870468 15875872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1292 320 460 Calmodulin-binding Proteins AT2G22960 27.660 2.89e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1292 K16297 - gmx:100805028 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1292 12 15870468 15875872 Lal12g1292 12 15870468 15875872 ECH