Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1287 ATGCAATCTTCATTAGAGTTTCAAGAGAACGATGAAGATGATTCCAAACCTAACAAGAAACGAACCAAATTCTACGATGTTTATGGACCTCAAGGCCAGGCAGATGTTGTTTTCAAGTCACCAGAAGATAATTCAACTCTGAATCTTAACGACGTTCAAGGACTTGTGACTTGGGTGCTTGGTGAAGGATTTATGCCATCATGGGTTTTTATCAAGCTACTAATGCAGCATTCCCATGATTTGCAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGACTGGATGCAGCTTTGTTCTTGTCACAGTCTAAAAGGCTTCCCAATTTAAAAAAATTCTGTCGCAAACCAAGGCCACTTCTAGCTCTTAGCCATATATCAGATGGTATGCAGACAGTAGATGCACTTCTAACATGCAAGATGAAAAGAAAGAGGGATCAGCTTAGTTCAATTATGCCGAAATCTACCCTGATATCTCAACAAGAAAAAGGTTGTAGTGATACAGATGGTGTATCATTTACGGAGCTTGTGAAAGACATACCGTTTCCCATTACATACTATACACTAACAGAGAAAGAACTGGAAGAGAATGGGTACTCTGTTAATCAGCCAGGTTTTCTTTCTACTATGCCTGCTCCTCAAGGATCTTTTTGTGAGATGTTGGCGCTTGATTGTGAGATGTGCATAACAAGCGAGGGTTTCGAACTGACAAGAGTTACTCTAGTGGATGTCCAAGGACAGGTTTTGATAGATAAATTGGTTAAACCATCAAATGCTATTACTGATTACAATACCAGATTTAGTGGAATAACGTCTCAGATGTTAGATGGGGTGACGACAAGTCTGAGAGACATTCAGGTTGTGTTAGTTGAGGAAGAGTTTCTAAAGCTGGTTTACAAAGAGACTATCCTTGTTGGGCATTCTTTGGAAAATGACTTATTAGCATTGAAGATATCTCATGATTTGGTCATTGACACAGCAGTATTATACAAACACCCACGAGGATCATCTCATAAAACTGCTCTACGGATTCTGACTAAGAGATTTCTTTCAAGGGAGATACAACAATCAGAGAATGGACATGACAGCATCGAAGATGCTAAAGCTACCATGGAATTGGCACTATTGAAGATTCGGAATGGCAATATACTTTCCAGTGACATGCTTTTTTTTTTTGGCTTCACTCTTGAAATAGGGCCTGACTTTGGTTCCCTTCCATCCTTTATGAGGAAAAAACTCCTTTCCATTTTGAGCGAGTCTGGCAAAACCTCATCTTTGATTGACAATATATCTGTTGTAAAACGATATGCCTCTGAGTCATCTCATTCAATTCCGGTGACCTCTGATGATGATGCACTTGCAAAGACCAACAAGGAGGTGAAGAATGATAAGGTACATTTTATCTGGACTCAGTTTTCTGAGTTACAGTCATACTTAAAGAAACAAGCTGAAGATTCAGAGATCTTGAATAAAAGACTCGCAGAGATGATGGCATTACTTACATGCCAGAAAGATTTGACAAAAGGTAAAGACTTTAAGTTGAGTGCATCTGCCGAACTGAAGCAAATTTTGGCTCGCATGGATGCTAGAATTCATAAACTGTACATGGCATTGCCTACTAATGCCATGTTGATAATTTGCACTGGTCATGGAGACACAGCAGTTGTCCACAGGCTGAAGAGAATGCTTGCTGAGGAGAGTGAAAGTAATTTTCGCCGAGAACATATTGTTGAAATCTTGGAAGAAGTTCAAGCTCAAGCTGAAGTAGCCTTATGTTTTGTAGGTGTAAAGCATTGA 1806 0.3948 MQSSLEFQENDEDDSKPNKKRTKFYDVYGPQGQADVVFKSPEDNSTLNLNDVQGLVTWVLGEGFMPSWVFIKLLMQHSHDLQNKPLIPKVVMLYMPGLDAALFLSQSKRLPNLKKFCRKPRPLLALSHISDGMQTVDALLTCKMKRKRDQLSSIMPKSTLISQQEKGCSDTDGVSFTELVKDIPFPITYYTLTEKELEENGYSVNQPGFLSTMPAPQGSFCEMLALDCEMCITSEGFELTRVTLVDVQGQVLIDKLVKPSNAITDYNTRFSGITSQMLDGVTTSLRDIQVVLVEEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKTALRILTKRFLSREIQQSENGHDSIEDAKATMELALLKIRNGNILSSDMLFFFGFTLEIGPDFGSLPSFMRKKLLSILSESGKTSSLIDNISVVKRYASESSHSIPVTSDDDALAKTNKEVKNDKVHFIWTQFSELQSYLKKQAEDSEILNKRLAEMMALLTCQKDLTKGKDFKLSASAELKQILARMDARIHKLYMALPTNAMLIICTGHGDTAVVHRLKRMLAEESESNFRREHIVEILEEVQAQAEVALCFVGVKH 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1287 601 SMART exoiiiendus 222 386 IPR013520 -
Lal12g1287 601 MobiDBLite consensus disorder prediction 9 23 - -
Lal12g1287 601 Pfam Exonuclease 225 376 IPR013520 -
Lal12g1287 601 SUPERFAMILY Ribonuclease H-like 223 382 IPR012337 -
Lal12g1287 601 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 586 - -
Lal12g1287 601 CDD REX1_like 224 378 IPR034922 -
Lal12g1287 601 MobiDBLite consensus disorder prediction 1 23 - -
Lal12g1287 601 PANTHER LD29573P 11 586 - -
Lal12g1287 601 Gene3D - 221 389 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1287 Lal-Chr12 15808353 15827240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1287 222 376 C2H2 Transcription Factor Family AT3G27970 30.588 1.36e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1287 K14570 - gmx:100802793 904.049