Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1284 ATGTCCCTAGAAGAGTCACTAAGATCTCTTTCCTTTGACTACCTCAACCTTCTCATCAATGGCCAAGCCTTCAGCGATGTAACCTTCCAAGTTGAAGGCCGTTTTGTCCACGCTCACCGCTGCATCTTGGCAGCAAGAAGCCTCTTCTTCAGGAAATTCTTCAATGGTCCAGACCCGTTATCGGGTCTGGACCCAACAGCAGGAGAACCCTTTCGAGTTAATTCCGGTGCCACTGGGACAACGCCTAGAACCCTGAGCGTAGTCCCAGTGAATTCGGTGGGATATGAAGTGTTCATGTTGCTGCTACAGTTCTTGTACAGTGGACAAGTCTCTATTGTGCCTCAAAAGCATGAGCCAAGGCCTAATTGTAGCGAGAGAGGATGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGATATTCTTGCTGCCTCTAGATACTTTGGGGTTGAACAGCTGGGATTGCTTACGCAGAAACAACTAGCCAACATGGTGGAGAAAGCCTCATTTGAAAATGTCATGAAAGTGCTCCTAGCTTCAAGAAAGCAAGAAATGCACCAACTATGGACTACTTGTTCCCACCTTGTTGCCAAGTCAGGTCTTCCACCTGAAATCCTCGCCAAACACCTCCCCATTGATATCGTCACCAACATCGAAGATCTTCGTCGCAGCTCTTTAATGCTGCTAAACCATCATCATCACCATCACCACCACCACGACCTCAGCACTGCCGCTGATCTCGAGGACCATAAAATCCGGAGAATGAGGAGGGCCCTCGAATCCTCCGATGTGGAACTAGTGAAGCTAATGATAATGGGAGAAGGCCTAAACCTTGATGAAGCATTGGCCTTACACTATGCAGTGGAGAATTGTAGTAGAGAAGTTGTGAAAGATTTGCTTGAGCTTGGTGCAGCTGATGTCAACTACCGGGCTGGGCCGGCCGGGAAAACCCCACTCCATGTCGCGGCAGAGATGGTGTCGCCGGACATGGTGGCGGTGCTGCTTGACCACCATGCTGACCCTAGTGTTAGGACGGTGGATGGTATCACCCCTCTTGAAACGCTCAGAACCCTAACCTCTGATTTCCTCTTTAAAGGTGCTGTCCCAGGACTAACACACATTGAACCCAACAAGCTTAGGTTATGTTTGGAACTTGTTCAATCCGCAGCACTTGTTCTTTCACGTGAAGAGTGCAATGCTAACCCTACTTCCACAACAGCCATATACCCATCAATGAGTGAAGACCCTAGCAGAAGTGGCAACAACAACATCGGCAACGACAACTCGCGCTCCAGGTTGATGTATCTCAACCTGGGTGCCACTCATGCGAGTGGTAGTGGTGATAGTGGTGATGATGATAATAGTCATAATACTCGTCATCGATCACAAGGTGGTGGATGTGACCCAACAATGTATCAGGACTACTAA 1434 0.4902 MSLEESLRSLSFDYLNLLINGQAFSDVTFQVEGRFVHAHRCILAARSLFFRKFFNGPDPLSGLDPTAGEPFRVNSGATGTTPRTLSVVPVNSVGYEVFMLLLQFLYSGQVSIVPQKHEPRPNCSERGCWHTHCTSAVDLALDILAASRYFGVEQLGLLTQKQLANMVEKASFENVMKVLLASRKQEMHQLWTTCSHLVAKSGLPPEILAKHLPIDIVTNIEDLRRSSLMLLNHHHHHHHHHDLSTAADLEDHKIRRMRRALESSDVELVKLMIMGEGLNLDEALALHYAVENCSREVVKDLLELGAADVNYRAGPAGKTPLHVAAEMVSPDMVAVLLDHHADPSVRTVDGITPLETLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREECNANPTSTTAIYPSMSEDPSRSGNNNIGNDNSRSRLMYLNLGATHASGSGDSGDDDNSHNTRHRSQGGGCDPTMYQDY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1284 477 SUPERFAMILY Ankyrin repeat 268 357 IPR036770 -
Lal12g1284 477 Pfam Domain of unknown function (DUF3420) 202 258 IPR024228 -
Lal12g1284 477 SMART BTB_4 25 167 IPR000210 GO:0005515
Lal12g1284 477 ProSiteProfiles BTB domain profile. 25 114 IPR000210 GO:0005515
Lal12g1284 477 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 475 IPR044284 GO:0099402
Lal12g1284 477 Pfam Ankyrin repeats (3 copies) 263 346 IPR002110 GO:0005515
Lal12g1284 477 SUPERFAMILY POZ domain 11 197 IPR011333 -
Lal12g1284 477 MobiDBLite consensus disorder prediction 404 437 - -
Lal12g1284 477 ProSiteProfiles Ankyrin repeat region circular profile. 316 346 - -
Lal12g1284 477 PANTHER REGULATORY PROTEIN NPR5 1 475 - -
Lal12g1284 477 SMART ANK_2a 316 345 IPR002110 GO:0005515
Lal12g1284 477 SMART ANK_2a 281 311 IPR002110 GO:0005515
Lal12g1284 477 Pfam BTB/POZ domain 16 115 IPR000210 GO:0005515
Lal12g1284 477 Gene3D Potassium Channel Kv1.1; Chain A 3 200 IPR011333 -
Lal12g1284 477 ProSiteProfiles Ankyrin repeat profile. 316 348 IPR002110 GO:0005515
Lal12g1284 477 Gene3D - 242 364 IPR036770 -
Lal12g1284 477 MobiDBLite consensus disorder prediction 404 477 - -
Lal12g1284 477 CDD BTB_POZ_NPR_plant 8 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1284 Lal-Chr12 15724186 15727565 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal12g1284 BTB 6.5e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1284 K14508 - zju:107433767 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1284 12 15724186 15727565 Lal12g1284 12 15724186 15727565 ECH
Lal12g1284 12 15724186 15727565 Lal13g1529 13 15044299 15047885 LSH