Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1236 ATGGATAGTTCCCGTAGACCGTTCGATAGATCGAGAAAACAAACCGGTCCGAAGAAGCCCCGATTAATGGAACAGCTCGGGGATCGCGCGTCGAGTAATCTCAGTGTTCGATCTTTTCCTCAGCGACAAGTGGCTTCTTCTGCATCAAGATTTAGAACAAATGACAGAGAATTGGAAAGAAGCAATTTTGATGGCGGTGGTGGTGGTGGTGGTTATCAGCCGCAGCCATTGGCGCCGCATCAGGAGCTTGTGCATCAGTATAAGACAGCCCTTGCTGAGCTTACTTTCAACTCGAAGCCGATTATTACGAACTTGACGATAATTGCAGGGGAGAACCAAATTGCGGCTAAGGCTATTGCTGCTGCTGTTTGTGCTAACATTATAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTATATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATGCTTTGCTGGCAGACTACCCGAGGTATTCTGCAAGGCATACCAACAGGCCGATCCTTCTCTTCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGACTATTGAGAAGGAACTGGGCTTTGCTCCAGCAGTTAATGGTTCTGCTTCCGCATCTGCTACACTTAGGAGTGGTTCACAATCACGTCCGCCACAAAGCATTCATGTCAATCCCAAGTATATAGAAAGGCAGTGTTTACAGCAGTCCAGCAGGTTTTTCGTACATGCTAGTGAAGTGACTTCTTTACCTACACTCGTTCATTCAAATGTAGGAATCCTTGCTTATATTTCACCACATCCAGAAGGCAATGCATTGGTCTTTGCTCATTTGACACTGTACCCGAACGATAACATTAACATTATCTTATCGTTGATCCATACTAAAGGAGTTGATGATGATATGACTGGAGCTACTGCAAACTCAAATGAGGATCCAGAAAGGGCAGAGAAAGCTTTGGGTGCTGCACGACAATGGAGTAATCAGCGCGCTCATAGAGATGCATTAAACGATCCTGTTCCAGAAAACAGCATTGTTGCATCCTATGGAGGCAGTGAATATGGTTCTGATATTTCAAGGAATTTAGGCTCGGGTATGGGTAGAGCTGGTGGTAGAGTCACTGAGTTAGAACGTGACAAAAGTTCGTTGAAATCAGGTAGTGGTGTTGCAGGGACAATATCTGGTAAAAGAAATGGTTTCAGTCTCAGGCATATTATTTCCAATACTGAGGCTTATCTTCAGCCAACACAGCAATTTCCTACCATACGAAGCAATGTGATGTCATGTAGCTGGAAAAATTCTGGGGAAGAGGAGTTCATGTGGGATGAGATGCACTCTGGATTGACTGGTCATGGTACACCCAAGGCCACAAACAATGGAAGCAAAGACCCTTGTACCGATGATGATGAAAATCTGGATGTTGAAGATCCCCTCCAAACCCAAAACCCTTTTGGAGAAAATGTTGATATGGAAATATCCACTGAGTACCTAGCCACTGGTAAAAAACAATTACCTGCATTTCGGCGTCATCCATCATTATCATGGAAATTGCAGGAGCAACACTCAGTTGATGAGTTAGATCGGAAACCTGGTCAGTCAGATGGATTTGTTTCCACTCAAGGCTTAAAAGGGAGAACAATTTCCTCTGCTGCCAGGATGGGTAATCGGCCTTTCCTGCCAAATGCAACAATAGGATTGGCAGGAACTGTTGTAGAGCAATTTCATCCCGTCGGAGCTGAATCCCCCTCTGGGCAGTCACCTTTGCGACAAGAGTCTTCACTACCAGCAAGTGTGCACTACCACCCTTATCAAATGCAAGATTTGGCAGAGCAAAACCGCCCCCAGACTCTTAAAACATCTAAATATTTGGGAGGTTTGCAGAGGCAATATATTAAAGATTCCTTACCTACCCTTCCTCCTAATGACCAGGTTGGTAACTTGCCAAGATCACAGCAAAGGGAGTTGCAGGGTCCATTCTCCTCAACAAAAACCTTTCAGCCACGGTATCCGCAGTTGCTGGGCTCTTCTCAAACTGAAGTTATGGCTAAGACTGAGAAGCCACCCTTGTCTAAAGTTTCTCTAGCTATAGAAACTCCGGAGCGGTCAAGCACAAGTAGTATGGATGCTGAAGCTGTGAAGAGTGGAATCTTCTCCAGCATGCCAATTACTAGTAGTCTTCCTACAAGTACTCAGGATACAAGGAATCTTCCATCTAAATTAGGGGTTCGGCCTACCCGGTCAGGTGGGCCTTCCCCTGCCAAACTAATTTCTTCTGTGTCTGCAATAACATCACCATCTTCATTAGGTCCTCATAATGATTCTTCATCTGCTCTGCCTGAAGTACCTCAAAGAAAGGCTGCAAAACTACCAATTGCATCTACTCTGCCACCAGCTTCCTCTAATGTCAGCAACACCTCAGCCCAGACATCAAGCGCTACCAATGATACTGCAAATCCAATTGCTAATCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCAGCAGAAACAGAGTCACCACCAAAGGTGGCATCTAAGATGCAGACTCGGTTAGAAGAACAGAGCAAAAGCGTTACTACCAGTAGTTCTTTGCCTGTTGCTTCAGTGTCTGGTTCTGCAGTGGTCCTTGAACCTTCTACCAAAGACAAGGAAGATGATACTGCAAAAACCCCTGTATCCCTTTCTGAATCAACCAGCCCAGAAATCAGAGATTTTATTGGCTTTGAGTTTAAGCCTCGTCTAATCCGAGAATTGCATCCATGTGTAATTAAAGGATTATTTGATGATCTTCCATATCATTGTGATGTTTGTGGCCTTAGACTTAAGTTGCAAGAAGAGTTTAATAGGCATTTGGAGTGGCATGCCACAAGAGAAAGAGAACAAAATGGTTCAAGAAGATGGTATCTAAAGTCAAGTGATTGGGTCGATGGAAAGGCTGATTATCCATCTGAGCATGAGTGCGCTGATTCTGCAGATACCTATAGTGAGGAAGAAGACAGGTGCCAAGAGGAAGCAATGGTTCCAGCAGATGAAAACCAATGCTTGTGTGTATTGTGTGGTGAGCTATTTGAAGATTTTTACTCTCAGGGAAATGGTGAGTGGATGTTTAAAGGGGCTGTTTACATGACTAACTCAGATAGCAATAGTGATTTGGAGATTGGAAATGCAAGTACTGCAAGCGGTCCCATCATTCATGCAAGATGCTTATCAGAGAACTTCATATCTAGTGCCATTGATAATGAAGAAAAGGAAATTCCATTGCGTCAAAATTATAAATCTGAGATAGAGAAGCGCTTCCTGGACCACTACACTAGTGAGTCTTTACCTTAA 3357 0.4385 MDSSRRPFDRSRKQTGPKKPRLMEQLGDRASSNLSVRSFPQRQVASSASRFRTNDRELERSNFDGGGGGGGYQPQPLAPHQELVHQYKTALAELTFNSKPIITNLTIIAGENQIAAKAIAAAVCANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKCFAGRLPEVFCKAYQQADPSLHQSMRHLFGTWRGVFPPQTLQTIEKELGFAPAVNGSASASATLRSGSQSRPPQSIHVNPKYIERQCLQQSSRFFVHASEVTSLPTLVHSNVGILAYISPHPEGNALVFAHLTLYPNDNINIILSLIHTKGVDDDMTGATANSNEDPERAEKALGAARQWSNQRAHRDALNDPVPENSIVASYGGSEYGSDISRNLGSGMGRAGGRVTELERDKSSLKSGSGVAGTISGKRNGFSLRHIISNTEAYLQPTQQFPTIRSNVMSCSWKNSGEEEFMWDEMHSGLTGHGTPKATNNGSKDPCTDDDENLDVEDPLQTQNPFGENVDMEISTEYLATGKKQLPAFRRHPSLSWKLQEQHSVDELDRKPGQSDGFVSTQGLKGRTISSAARMGNRPFLPNATIGLAGTVVEQFHPVGAESPSGQSPLRQESSLPASVHYHPYQMQDLAEQNRPQTLKTSKYLGGLQRQYIKDSLPTLPPNDQVGNLPRSQQRELQGPFSSTKTFQPRYPQLLGSSQTEVMAKTEKPPLSKVSLAIETPERSSTSSMDAEAVKSGIFSSMPITSSLPTSTQDTRNLPSKLGVRPTRSGGPSPAKLISSVSAITSPSSLGPHNDSSSALPEVPQRKAAKLPIASTLPPASSNVSNTSAQTSSATNDTANPIANLLSSLVAKGLISAETESPPKVASKMQTRLEEQSKSVTTSSSLPVASVSGSAVVLEPSTKDKEDDTAKTPVSLSESTSPEIRDFIGFEFKPRLIRELHPCVIKGLFDDLPYHCDVCGLRLKLQEEFNRHLEWHATREREQNGSRRWYLKSSDWVDGKADYPSEHECADSADTYSEEEDRCQEEAMVPADENQCLCVLCGELFEDFYSQGNGEWMFKGAVYMTNSDSNSDLEIGNASTASGPIIHARCLSENFISSAIDNEEKEIPLRQNYKSEIEKRFLDHYTSESLP 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1236 1118 MobiDBLite consensus disorder prediction 643 676 - -
Lal12g1236 1118 Pfam CID domain 88 198 IPR006569 -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 1 25 - -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 760 788 - -
Lal12g1236 1118 ProSitePatterns Zinc finger C2H2 type domain signature. 943 963 IPR013087 -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 847 905 - -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 731 749 - -
Lal12g1236 1118 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 731 791 - -
Lal12g1236 1118 Gene3D - 77 204 IPR008942 -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 330 350 - -
Lal12g1236 1118 SMART 558neu5 82 204 IPR006569 -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 1 73 - -
Lal12g1236 1118 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 303 1089 - -
Lal12g1236 1118 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 249 - -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 642 676 - -
Lal12g1236 1118 SUPERFAMILY ENTH/VHS domain 79 208 IPR008942 -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 28 51 - -
Lal12g1236 1118 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 303 1089 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lal12g1236 1118 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 249 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lal12g1236 1118 MobiDBLite consensus disorder prediction 850 884 - -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 454 479 - -
Lal12g1236 1118 MobiDBLite consensus disorder prediction 803 825 - -
Lal12g1236 1118 CDD CID_Pcf11 84 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1236 Lal-Chr12 14987192 14997981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1236 69 240 C2H2 Transcription Factor Family AT4G04885 57.558 3.41e-53 199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1236 12 14987192 14997981 Lal12g1236 12 14987192 14997981 ECH