Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1225 ATGGAGAAACGAAGGGATGGAAGGAAGAAGTTCCATGAAACTCGACATCCAATCTATAAAGGTGTGAGACAAAGAAACGGGAAATGGGTTTGTGAGCTAAGAGAACCTAACAACAAAACTCGTGTATGGCTTGGAACATTTTCACATCCAGACATGGCAGCCATAGCCTATGATGTTGCAGCTTTAGCTTTCAAAGGAGACACTGTTTACTTAAATTTCCCTCACTCAGTTACCACGTTGCCACGCCTTAACTCGAAGACCTCTTCCATTAGAGACATTCAGTTTGCTGCAATGCAAGCAGCTCAGAAACACTTCTCCAGAGAGTTGAAACCCAAAGAAATCAGTGGTGAAAATGCTTCTGAGGTGGGTTTAGAAGGAGATTCTAGAAGCTTCTTTTGGGATGAAGAAGAAGTGTTTAACATGCCAGGGTTGATGAATAGCATGGCAGAAGGGTTGATTATCACACCACCAGCTTTGCAGAGAGGATTCAATTGGGTTTGTGAGGAAAGTTTTGTAGACTTGACTCTCTGGGGAGACTGA 540 0.4315 MEKRRDGRKKFHETRHPIYKGVRQRNGKWVCELREPNNKTRVWLGTFSHPDMAAIAYDVAALAFKGDTVYLNFPHSVTTLPRLNSKTSSIRDIQFAAMQAAQKHFSRELKPKEISGENASEVGLEGDSRSFFWDEEEVFNMPGLMNSMAEGLIITPPALQRGFNWVCEESFVDLTLWGD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1225 179 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Lal12g1225 179 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Lal12g1225 179 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 177 - -
Lal12g1225 179 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Lal12g1225 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 177 - -
Lal12g1225 179 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lal12g1225 179 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Lal12g1225 179 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Lal12g1225 179 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Lal12g1225 179 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1225 Lal-Chr12 14877346 14877885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1225 3 177 AP2-EREBP Transcription Factor Family AT4G25470 45.109 7.94e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal12g1225 AP2 2.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1225 - - aprc:113870892 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1225 12 14877346 14877885 Lal12g1225 12 14877346 14877885 ECH