Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1224 ATGAAGGTAATCGCTGCTTATTTGTTGGCTGTGCTTGGAGGCAATAACACTCCTTCCACTAAGGACATCAAGAATATCCTTTCCTCTGTTGGAGCTGAAGCGGATGATGACAAGATTGAACTGCTTTTATCTCAAGTTAAGGGTAAAGATATAGCTGAAGTTATTGCTTCTGGTAGGGAAAAGTTAGCCTCAGTGCCTTCCGGTGGTGGTGCAGTTGCGGTTGCCGCCGCTCCTGGCGGAGGAAGTGGTGGAGCTGCTGCCCCAGCAGCTGCTGAGGCAAAGAAGGAGGAGAAGGTGGAGGAGAAAGAGGAATCCGACGATGATATGGGTTTCAGTCTCTTCGATTAA 348 0.4885 MKVIAAYLLAVLGGNNTPSTKDIKNILSSVGAEADDDKIELLLSQVKGKDIAEVIASGREKLASVPSGGGAVAVAAAPGGGSGGAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1224 115 Pfam 60s Acidic ribosomal protein 18 114 - -
Lal12g1224 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lal12g1224 115 Gene3D - 1 59 IPR038716 -
Lal12g1224 115 MobiDBLite consensus disorder prediction 76 115 - -
Lal12g1224 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lal12g1224 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 2 115 - -
Lal12g1224 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1224 Lal-Chr12 14836330 14839196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1224 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 68.696 6.27e-31 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1224 K02943 - qsu:111996733 127.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1224 12 14836330 14839196 Lal12g1224 12 14836330 14839196 ECH