Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1130 ATGGGAAACAGCTGTGTAGGATCATCAAAAAGTCCAACCACTACTTGTTCAGATTCATTATGGTGGTCTAAGAAGAAGAAAGAAGCTTCACAAAAAGTAGAAACTGAGAGCAGAAACATAAACACTACAAAAAATGTTGAACAAAAAGCTCCACAGATGATGAAGATTGAGGAGGAAATGAAAGCAGCTCAACAAAAAGAACCAATAAGGCACACAGAAGAAGCTACTTCACATGCACCGCAAGCAAATCCTGCAGGACCAAAGAAGCCCCACAATGTTATAAGACAAGCAAGTGCTGGCCTTAAAACTGAATCAATTCTTCTGAAGAAAACAGGTAATCTTAGAGACTTCTACAATCTGGGACGAAAACTCGGAAAAGGGCAATTTGGAACAACATTTCATTGTGTTGAGAAAGCTACAGGGAAAGAGTATGCATGTAAGTCTATTGTGAAGAGGAAATTGTTAACAGAAGATGATGTAGAGGATGTGAGGAGAGAGATTCAGATAATGCATCATTTGATTGGAAGCCCTAATGTGATTTTGATCAAGGAGGCTTATGAGGATGCTGTTTCTGTTCATGTTGTGATGGAACTGTGTGCAGGAGGTGAGCTTTTTGATAGGATTGTGGAAAGAGGACATTATACTGAGAGAAAAGCTGCGAAACTTGCAAGGACTATTGTTGGTGTTATTGAGTCTTGTCACTCTCTTGGAGTTATGCATAGAGATCTTAAGCCAGAGAATTTTCTTTTCATTAATCAGCAGGAAGATTCCCCTCTTAAGGCAATAGATTTTGGACTGTCTGCTTTTTTCAAACCAGGTGAGATTTTCCATGATGTGGTGGGAAGTCCTTATTATGTTGCACCAGAAGTTTTACGCAAGCGTTATGGTCCAGAAGCAGATGTGTGGAGTGCTGGTGTTATCATATACATTCTCTTATGTGGTGTGCCTCCATTTTGGGGTGAATCGGAGCAGGAGATATTTGAGGCAATTTTGCATGCTGAAGCAGATTTCATTTCAGATCCTTGGCATACTATATCTGGAAGCGCAAAAGACTTGGTTAGAAAGATGCTTGTCAGAGATCCTGCTAAAAGAATATCAGCTTATGAAGTTCTTAGTCACCCCTGGATTCAAGTTGATGGAGAAGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGTCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTCAGAGTGATTGCAAAGAACCTCTCTGAAGAGGAAATTGCTGGATTGAGAGAGATGTTTAAAATGATAGACACAGACAATAGTGGCCAAATTACTTTTGATGAACTCAAGGTTGGACTCAAAAAGTTTGGTGCTAATCTCAAAGAATCTGAAATTTACGATCTATTGCAGGCTGCAGATGTTGATAACAGTGGCACAATTGGCTATGGAGAATTCATTGCTGCAACGTTGCATTTAAACAAAATTGAAAGGGAAGATCACTTAGTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGCGGATACATTACTCAAGATGAGCTTCAACAAGCATGTGAAGAATTTGGCATAAAGGACGCCCGATTGGAGGAAATGATCCGAGAAGCTGATCAAGATAATGATGGAAGAATAGACTACAATGAATTTGTGGACATGATGCAGAGAGGCAATGAGGATATGGGTAAGAGAGTCCAAAAGGGTAGTAGTAGTTTTAGCATTAGATTTAGGGAGGCACAACCGGTATGTTAA 1752 0.3984 MGNSCVGSSKSPTTTCSDSLWWSKKKKEASQKVETESRNINTTKNVEQKAPQMMKIEEEMKAAQQKEPIRHTEEATSHAPQANPAGPKKPHNVIRQASAGLKTESILLKKTGNLRDFYNLGRKLGKGQFGTTFHCVEKATGKEYACKSIVKRKLLTEDDVEDVRREIQIMHHLIGSPNVILIKEAYEDAVSVHVVMELCAGGELFDRIVERGHYTERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFINQQEDSPLKAIDFGLSAFFKPGEIFHDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIYILLCGVPPFWGESEQEIFEAILHAEADFISDPWHTISGSAKDLVRKMLVRDPAKRISAYEVLSHPWIQVDGEAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAKNLSEEEIAGLREMFKMIDTDNSGQITFDELKVGLKKFGANLKESEIYDLLQAADVDNSGTIGYGEFIAATLHLNKIEREDHLVAAFSYFDKDGSGYITQDELQQACEEFGIKDARLEEMIREADQDNDGRIDYNEFVDMMQRGNEDMGKRVQKGSSSFSIRFREAQPVC 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1130 583 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 565 - -
Lal12g1130 583 Gene3D Transferase(Phosphotransferase) domain 1 204 400 - -
Lal12g1130 583 SUPERFAMILY Protein kinase-like (PK-like) 116 377 IPR011009 -
Lal12g1130 583 MobiDBLite consensus disorder prediction 1 90 - -
Lal12g1130 583 SMART efh_1 459 487 IPR002048 GO:0005509
Lal12g1130 583 SMART efh_1 423 451 IPR002048 GO:0005509
Lal12g1130 583 SMART efh_1 529 557 IPR002048 GO:0005509
Lal12g1130 583 SMART efh_1 495 523 IPR002048 GO:0005509
Lal12g1130 583 SUPERFAMILY EF-hand 405 556 IPR011992 -
Lal12g1130 583 ProSitePatterns EF-hand calcium-binding domain. 538 550 IPR018247 -
Lal12g1130 583 Pfam Protein kinase domain 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1130 583 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g1130 583 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 44 565 - -
Lal12g1130 583 ProSiteProfiles EF-hand calcium-binding domain profile. 527 560 IPR002048 GO:0005509
Lal12g1130 583 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Lal12g1130 583 ProSiteProfiles Protein kinase domain profile. 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1130 583 Gene3D Phosphorylase Kinase; domain 1 120 203 - -
Lal12g1130 583 MobiDBLite consensus disorder prediction 51 74 - -
Lal12g1130 583 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Lal12g1130 583 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Lal12g1130 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lal12g1130 583 Gene3D - 401 559 - -
Lal12g1130 583 CDD EFh 495 555 IPR002048 GO:0005509
Lal12g1130 583 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Lal12g1130 583 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Lal12g1130 583 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Lal12g1130 583 CDD STKc_CAMK 117 375 - -
Lal12g1130 583 MobiDBLite consensus disorder prediction 35 49 - -
Lal12g1130 583 SMART serkin_6 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1130 583 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Lal12g1130 583 Pfam EF-hand domain pair 495 555 IPR002048 GO:0005509
Lal12g1130 583 Pfam EF-hand domain pair 424 484 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1130 Lal-Chr12 11911831 11917939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1130 74 577 EF-hand Containing Proteins AT3G10660 75.644 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal12g1130 Pkinase 5.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1130 K13412 - gmx:100800415 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1130 12 11911831 11917939 Lal12g1130 12 11911831 11917939 ECH