Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1099 ATGAAGCAGACACAAACAATATTTATTTATAGTAAATCATCATTTGGAAGATTTTGGAAGAGATATATGGCGAAGCAAACTATTTATTTTAAGGAGCATGAAGGAATTATACACAATTCTCTTGGATCTCAATCATTTTATGGAGAATCTTGTGGCCAAATGAAACCCTTTTCATTAGAGATTCCCAACTATATTGACCAACTTGCTTCAAGTAAGGAATCTGTAAAAAGAGTTGAACAATTGTTGTATAAAGGAAATACAACATCGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGATTTGAACATAAGCCTCATGCATCCTTATCACTACAGTCATCACTTGCCGAGTCCCACAATTGTTTTGAGCTAGGGTTTAGTCAGCCTATGATCTATGCAAAACATCCTTATATGGATCAATTTTGTGGGTTCTTCTCGGCCCATGGACCTCAAATTTTGGGGCGTATGATGCTGCCACTTAACTTGACATCTGATGAAGAACCAACTTACGTAAATGCTAAACAGTACCATGGAATCATCAGACGCCGAAAGTCTCGTGCAAAAGCTTTACTTGAGAATAAATTGAGAAAACGGAACAAGCCATATATGCATGAATCACGCCATCTCCATGCACTTCAGCGGCCAAGAGGATGTGGAGGTCGTTTCTTAAACACAAGGAGTTCTACTAATGAAAATGGTAAAAGTGGAAGTGAACCAAATAAAACTGGTGGTGGTCAACAATTGCATTCCAGTAGTTCTCAGAATTCTGAAGTCCTGCATTCCGAGGTTGGAACCTTAAATTCATCAAAAGAGACCAATGGAAACAATCAAAATATTTCAGGGACAGAGGTGAAAAGCATGTACTCTCGGGGAGGTCTCAATAGCTTTGCTTCCAATAATCTAGCAGACATTACGAATCGTGGACTCAAACTGGGTGTTGTGGATTTCTAA 954 0.3836 MKQTQTIFIYSKSSFGRFWKRYMAKQTIYFKEHEGIIHNSLGSQSFYGESCGQMKPFSLEIPNYIDQLASSKESVKRVEQLLYKGNTTSFTIFPDDCKMSGFEHKPHASLSLQSSLAESHNCFELGFSQPMIYAKHPYMDQFCGFFSAHGPQILGRMMLPLNLTSDEEPTYVNAKQYHGIIRRRKSRAKALLENKLRKRNKPYMHESRHLHALQRPRGCGGRFLNTRSSTNENGKSGSEPNKTGGGQQLHSSSSQNSEVLHSEVGTLNSSKETNGNNQNISGTEVKSMYSRGGLNSFASNNLADITNRGLKLGVVDF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1099 317 MobiDBLite consensus disorder prediction 196 283 - -
Lal12g1099 317 Gene3D - 167 227 - -
Lal12g1099 317 MobiDBLite consensus disorder prediction 223 283 - -
Lal12g1099 317 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 26 303 - -
Lal12g1099 317 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 26 303 IPR001289 GO:0003700|GO:0006355
Lal12g1099 317 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
Lal12g1099 317 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Lal12g1099 317 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Lal12g1099 317 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Lal12g1099 317 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Lal12g1099 317 MobiDBLite consensus disorder prediction 196 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1099 Lal-Chr12 11138085 11150854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1099 19 288 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.406 2.75e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal12g1099 CBFB_NFYA 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1099 K08064 - gmx:100794755 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1099 12 11138085 11150854 Lal12g1099 12 11138085 11150854 ECH