Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1092 ATGGAAGACATTGATGTTCCACCACTTTTTCTCTGTCCCATTTCATTAGAAATCATGAAGGATCCTGTGACTGTTTCTACTGGTATCTCCTACGATAGAGAGAGCATTGAAAAATGGATATTTTCCGGCAAAAACAAGACTTGTCCAGTCACCAAACAACCCCTCTCAGACTCTATTAACCTCACACCGAACCACACTCTCCGGCGATTGATTCAAGCGTGGTGCACCATCAATGCTTCTCACGGTGTTGAAAGGATTCCAACTCCTAAATGTCCAATCAACAAAACACAGATAGAGAAACTCATCAAAGATGCTTCTCTTTCGCCTCAGTTAATGGTTTTGAGTCTTGGAAGACTCAAAACCATCGTTTCTGAGAGTGAAGCCAACAAACGCTGCATGGAAGAAGCTGGCGCTGTTGAGTTCTTAGCATCAATTGTAATGAACAACATCGTTTCTTCATCATCTAATAACCAAGATGATGGCGACGATGGTGATGATGATGGTGATGGTGATGATGACGATGACTGGTTTGATCAAAAAACTGGTGCAGGTGATGAAGCCTTAAGCATACTATATAATCTTCATTCATCAGAAGCTGGTTTGAAGACTCTTATAGGTTTAAAAGGTGGCGAGTTTATTGATTCATTAACAAGAGTTATGCAAAAGGGTATCTATGATTCGAGAGCATACGCAGTTTTATTATTGAAATCTATATCTGAAGTGGCTAACCATGTTGACATAGCCAATTTAAGAAATGAATTGTTCATGGAATTAGTACAAGTCCTTAAGGACCAGATTTCATCCAAGGCTTCAAAAGCAGCACTACTGACATTGATACAACTCATTCCTTGGGGCAGAAACAGGATCAAAGCAGTGGAAGCAGGTGCTATTGCGGTTTTGGTAGATCTTCTTCTTGATTCGAATGAAAGAAAGGGTTGTGAAATGATGCTAGTGCTTCTTGAGATGTTGTGCCAAAGTGCTGATGGACGCGCAGAGTTGTTGACCCATGGAGCCGGTTTAGCCATTGTTTCGAAGAAGATCCTTAGGGTTTCAACCATGGCAAATGATAGGGCTGTAAGGATTCTTCTATCTATTTCTAGATTCTCTGCAACAACAAGTGTTGTTCAAGAAATGCTGCAGCTTGGGATTGTGGCAAAGCTATGTTTGGTGCTTCAAGTGGATAGTGGGAACAAGACTAAGGAGAAAGCACGAGAGATACTCAAACTTCATGCTCGGTCATGGAGGAATTCTACTTGCATACCCAGAAATTTGCTTGATTCATACCCATAA 1290 0.4109 MEDIDVPPLFLCPISLEIMKDPVTVSTGISYDRESIEKWIFSGKNKTCPVTKQPLSDSINLTPNHTLRRLIQAWCTINASHGVERIPTPKCPINKTQIEKLIKDASLSPQLMVLSLGRLKTIVSESEANKRCMEEAGAVEFLASIVMNNIVSSSSNNQDDGDDGDDDGDGDDDDDWFDQKTGAGDEALSILYNLHSSEAGLKTLIGLKGGEFIDSLTRVMQKGIYDSRAYAVLLLKSISEVANHVDIANLRNELFMELVQVLKDQISSKASKAALLTLIQLIPWGRNRIKAVEAGAIAVLVDLLLDSNERKGCEMMLVLLEMLCQSADGRAELLTHGAGLAIVSKKILRVSTMANDRAVRILLSISRFSATTSVVQEMLQLGIVAKLCLVLQVDSGNKTKEKAREILKLHARSWRNSTCIPRNLLDSYP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1092 429 MobiDBLite consensus disorder prediction 153 178 - -
Lal12g1092 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 429 - -
Lal12g1092 429 MobiDBLite consensus disorder prediction 159 178 - -
Lal12g1092 429 SUPERFAMILY ARM repeat 100 408 IPR016024 -
Lal12g1092 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lal12g1092 429 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lal12g1092 429 Gene3D - 96 420 IPR011989 -
Lal12g1092 429 SUPERFAMILY RING/U-box 3 81 - -
Lal12g1092 429 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Lal12g1092 429 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lal12g1092 429 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lal12g1092 429 PANTHER WDSAM1 PROTEIN 1 429 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1092 Lal-Chr12 10891500 10892789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1092 2 429 U-box Gene Family AT3G52450 58.199 1.87e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1092 - - gmx:100811258 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1092 12 10891500 10892789 Lal12g1092 12 10891500 10892789 ECH