Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1016 ATGGGTGACAAGCAAGAAGATGAGAGCAGTGATTTCACGTCCGAGGATGAAGGAACTGAGGATTATCGACGAGGTGGTTACCACGCTGTACGAATTAGCGACACTTTTAAGAATGGTCGCTATGTTGTTCAAAGTAAACTTGGTTGGGGCCACTTTTCCACTGTTTGGCTCGCTTGGGATACCCAGCACTCCAAATATGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCATTACACAGAGGCAGCCCTGGATGAGATAACGATTTTGCAACAGATTGCAGAGGGAGACCCGGATGATAAGAAATGTGTGGTAAAGCTTTTGGATCATTTCAAGCATTCTGGTCCGAATGGGCAGCATGTTTGCATGGTGTTTGAGTATCTTGGGGATAATCTTTTAACTCTTATAAAGTATTCTGATTATCGTGGAATGCCGATCAACATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATCATACATACTGACTTGAAACCTGAAAACATCCTCCTTTTATCAACAATAGATCCATCTAAGGATTCTAGAAAGTCTGGTGTTCCTCTTATTCTTCCCAATACCAAAGATAAGACAGTACTGGAGTCAGGAGCTGCAAAAGAGACAAAAACATTGAATGGAGAGTTGATTAAGAATCATAAGAAAAAGATTAAAAGAAAAGCTAAGCAAGCAGCTAATGGATGTGTCGAGAAGGACACTTCTGAAGGAGTTGATGGTAATCATGAAACCTCTGGTTCTGTGGAATGTTCTCCAACTGCAAGTTCTTCAAGAGAACAGGCTTCTAGTTCTTCAGGCACAGGTAAGTTGTTAGATGCCGATGGAACAAAGTCAAAAGAGCAGGGTAACAAAAGAGGAAGCCGTACAATGAGACAGAAGTTGTTAGCAACAGCTGATCTCAAGTGCAAGCTCGTTGATTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATCCAGACAAGACAATATCGGTGCCCAGAGGTTATCCTTGGATCAAAATATTCTACTTCTGCAGATCTTTGGTCTTTTGCTTGCATTTTCTTTGAGCTGGCTACTGGAGATGTGCTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGATGAGGCAAGCCTCGGCACAATGGTTGGTAGTGCTGAAATATGCTTGCATTTTGCTTCACTTTGGACTTGTTTCTTACACAAGTTTGTTCTGTCCTTACTTTCATCTCAGGATCACTTAGCTTTAATGATGGAACTTCTTGGAATGATGCCAAGGAAGATTGCACTAGGGGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGATCTGAGGCATATCCGGAGGTTGCGATTCTGGCCATTGAACAAGGTCCTCATGGAGAAATATGATTTCAGTGAGCAAGATGCAAATGACCTGACCGACTTTCTGGTTCCTATTCTTGACTTTGTTCCTGAGAAGCGGCCTACTGCTGGTCAGTGCCTTCTCCATCCATGGATGAATGCAGGTCCGCGCCTTTTGGAGCCATCTGTGCCTTCTAATCACAACCGAGCTGCCGATGCTGCTATTTCTGAGCAAAAGAGAAAGGATAAAGACGAGAGGGAGGCGTTGGAGGCAGGAATGGGAAATATTGCTATCAATTCAGATGCTAAACAATTCTTACCTTCCCCATCTAAGAAAGCCTTCCAAGGCAGCCACAGGTAG 1734 0.4262 MGDKQEDESSDFTSEDEGTEDYRRGGYHAVRISDTFKNGRYVVQSKLGWGHFSTVWLAWDTQHSKYVALKVQKSAQHYTEAALDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDSRKSGVPLILPNTKDKTVLESGAAKETKTLNGELIKNHKKKIKRKAKQAANGCVEKDTSEGVDGNHETSGSVECSPTASSSREQASSSSGTGKLLDADGTKSKEQGNKRGSRTMRQKLLATADLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACIFFELATGDVLFDPHSGDNFDRDEASLGTMVGSAEICLHFASLWTCFLHKFVLSLLSSQDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEQDANDLTDFLVPILDFVPEKRPTAGQCLLHPWMNAGPRLLEPSVPSNHNRAADAAISEQKRKDKDEREALEAGMGNIAINSDAKQFLPSPSKKAFQGSHR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1016 577 CDD STKc_SRPK 30 510 - -
Lal12g1016 577 MobiDBLite consensus disorder prediction 559 577 - -
Lal12g1016 577 MobiDBLite consensus disorder prediction 558 577 - -
Lal12g1016 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Lal12g1016 577 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 417 570 - -
Lal12g1016 577 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 391 - -
Lal12g1016 577 MobiDBLite consensus disorder prediction 286 300 - -
Lal12g1016 577 MobiDBLite consensus disorder prediction 230 303 - -
Lal12g1016 577 SUPERFAMILY Protein kinase-like (PK-like) 35 522 IPR011009 -
Lal12g1016 577 PANTHER SERINE KINASE-LIKE PROTEIN 9 391 - -
Lal12g1016 577 PANTHER SERINE KINASE-LIKE PROTEIN 417 570 - -
Lal12g1016 577 Gene3D Phosphorylase Kinase; domain 1 17 123 - -
Lal12g1016 577 Pfam Protein kinase domain 41 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1016 577 Pfam Protein kinase domain 308 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1016 577 MobiDBLite consensus disorder prediction 1 21 - -
Lal12g1016 577 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Lal12g1016 577 ProSiteProfiles Protein kinase domain profile. 41 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1016 577 MobiDBLite consensus disorder prediction 253 284 - -
Lal12g1016 577 SMART serkin_6 41 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1016 577 Gene3D Transferase(Phosphotransferase) domain 1 124 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1016 Lal-Chr12 9050320 9061544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1016 8 562 EF-hand Containing Proteins AT5G22840 64.029 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lal12g1016 Pkinase 1.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1016 K08832 - gmx:100803070 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1016 12 9050320 9061544 Lal12g1016 12 9050320 9061544 ECH