Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1008 ATGAAGTTTCAGAAGCCTAGTAAAATTCAAGCTATCAGTTTGCCTATGATTTTGAACCCTCCGAATCGGGATTTGATTGTGCAGGCGCATAATGGTTCTGGAAAAACCACTTGCTTCGTGCTTGGGATGCTTAGTCGTGTTGATCCTAAGCTTCAGGCTCCTCAAGCTCTCTGCATTTGCCCAACTAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGGAAGTACACGGGGATTAGTTCAGAATGTGCTATTCCTGTGGACAGTGGGGTCGATCTTCCTATAGCGAAACGGCCGCCAATTATGGCCCAAGTGATTATTGGGACTCCAGGCACAATAAAGAAGTGGATGACTTTTAAGAAACTGGGTGTAGCCCGATTGAAGATACTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGTTCTTCTGTTTTCTGCCACATTCAATGACATTGTCAAGAATTTTGTTTCGAGGACAGTTAAGGCGGATCATAATAAACTTTTTGTGAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAGTACAAAGTGCGTTGTCCTGATGAACTCTCTAAGATTGAAGTCATAAAAGATTACATGTTTGAAATAGGAGAGAACGTGGGGCAAACTATTATATTTGTACGCACAAGAGAAAGTGCAAAAATGTTGCATAAAGCACTTGTTGATTTGGGCTATGAGGTTACTTCCATACAAGGTGCTCTTGATCATGAAGAGAGAGACAAGATTGTCAAGGAGTTCAAAGATGGTTTAACTCAAGTTCTTATATCAACTGATGTTCTTGCTCGAGGCTTTGATCAACAACAGATTAATTTGGTTATCAACTATGATCTTCCACTGAAACATACTCCTGAGCATACCCGTGAACGTGAGCCTGATTATGAGGTGTATTTGCACAGAGTTGGTAGGGCTGGACGTTTTGGGTGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAAAGATGAAAGGCTTATGTCAAAGATTGAGAACCATTTTGGCACCAATGTAGCTGAGGTGCGGGAAAACAGTGTTGAAGACTATAAAGGTGCTCTTAAGGAGGCTGGTTTACTAATGATGTAA 1113 0.4142 MKFQKPSKIQAISLPMILNPPNRDLIVQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNTEVLRKMGKYTGISSECAIPVDSGVDLPIAKRPPIMAQVIIGTPGTIKKWMTFKKLGVARLKILVFDEADQMLAEVLLFSATFNDIVKNFVSRTVKADHNKLFVKKEELSLDAVKQYKVRCPDELSKIEVIKDYMFEIGENVGQTIIFVRTRESAKMLHKALVDLGYEVTSIQGALDHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQINLVINYDLPLKHTPEHTREREPDYEVYLHRVGRAGRFGCKGAVFNLICGEKDERLMSKIENHFGTNVAEVRENSVEDYKGALKEAGLLMM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1008 370 Pfam DEAD/DEAH box helicase 8 163 IPR011545 GO:0003676|GO:0005524
Lal12g1008 370 CDD SF2_C_DEAD 183 327 - -
Lal12g1008 370 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 199 359 IPR001650 -
Lal12g1008 370 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 16 170 IPR014001 -
Lal12g1008 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 336 IPR027417 -
Lal12g1008 370 PANTHER DEAD-BOX HELICASE DBP80 2 348 - -
Lal12g1008 370 Gene3D - 1 177 IPR027417 -
Lal12g1008 370 Pfam Helicase conserved C-terminal domain 196 318 IPR001650 -
Lal12g1008 370 SMART helicmild6 225 318 IPR001650 -
Lal12g1008 370 SMART ultradead3 2 186 IPR014001 -
Lal12g1008 370 Gene3D - 178 359 IPR027417 -
Lal12g1008 370 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1008 Lal-Chr12 8888274 8896160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1008 3 353 Eukaryotic Initiation Factors Gene Family AT1G72730 34.759 2.00e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1008 K18655 - gmx:100778091 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1008 12 8888274 8896160 Lal12g1008 12 8888274 8896160 ECH