Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1000 ATGGATTCCGTTAAATCAGAATCCGAATCGATGATAACCGTTAACGACAGCAAAGGTGACGTCATCAATGGTTACATCGTTTACACTCGCCGAAAGAGAACGATTCCTTCTCATAACGGGAACGAAGCGAAGAGAATCAAAACCGAAGAAGAGAAAGAGGAAGTGGAACCGAATGCAGATGATGGAAACGTTGAAATTGAAGTGAAAAATGAAGGAGGAGTGTTTGCGGAAAGTGGTGGCTCCATCGAGGTTGAGGTTGTTCAAGACGACGTCGTTATTTGCAGAAGAGGCGTGGAAACCACTCGCGTTGCGCATCGTGATAAGAATGTTATTGTTGTTAATAAGAAACCTTTGACAGTTAAGGAACTCTTTGATACTGGTTTGGTTGATGGAGTTCCAGTTATTTACATGGGTAATAAGAAGGATCAAACATCCGGATTGCGGGGTGTGATTCAAGATGGTGGGATATTGTGTTCATGCAGTATCTGCAACAGACGCAGGGTTATTCCACCCTCCCAATTTGAGATTCATGCGTGTAATACATATAAGAGAGCAACAGAGTATATTTGCCTCGAAAATGGGAAGAGTTTGCTTGAGCTATTGAGAGCATGCCGGACAGCTCCCCTACATACTTTGGAAGCGACAATTCAAAATTTTGTTTGTTCACTGCCCGAAGAGAAATATTTTACTTGCAAAGATTGCAAAGCGTGTTTCCCTTCATCAAGTGGGGGAAGGGTGGGGCATCTATGCTGTTCTTGCTTGGAATCAAGGAAATATTTTACTTGTAAAATTTGCAAAGCGTGTTTCCCTTCATCAAGTGAGGGAAGGGTGGGGCATCTATGCTATTCTTGCCTGGAATCAAGGAAATCTGAAGGCAGTTCTATTCACACACTTGGCAAAAGAGTCAGGACTCCTAAAGTGGCATCTGAACTGTATATCTCTTCAAAAACCAAGAGACACGGGAAGAAAAGGACAATGTCAACAAAGCTTTCCGTAAAATCGAAGACCGCTCCAATTACTTCAAATTCAAAGTGTTTATCTCCTCGAAATAAGAGTCAGTGGAGGATCACTAAAAAGTATCAGCGATTGCATAAATTACTTTTTGAAGACAATGGATTGCCTGATGGAGCTGCACTAGCATATTATGCACGTGGGCAGAAATTGCTTGAGGGTATCAAAAGGCGCTCTGGAATTTTTTGTGGGTGCTGCAACACTGAGATCAGCCCTTCACAATTTGAGGTCCATGCTGGCTGGGATTCTCGCAGGAAACCTTATGCATACATTTACACGTCAAATGGTGTTTCACTGCATGAGTTAGCAATATTTCTGTCGAAAGATCGCCAATGCACTGGAAAGTATAAAAATGATTTATGCATTGTTTGTTGGAATGGTGGAAAACTGTTGCAATGTGATGGATGCTCAAGGTCATTTCATAAAGAATGTGCATCTCTATCTAGTACTCCGCGTGGTGAATGGTACTGTCAAATTTGCCAAAACATGTTCCACAGTGAAAGGTCCTTGGCGCTTAATGTTGATGCTGTGGCAGCTGGAAGGGTTGCTGGAGTTGATCCTATTGAACAGATTGTGAAGAGATGCATTCGTATAGTAAAAGACAATAACATTGAAGCTGAGATTAGTGGATGTGATTTATGCAGGGGCTCTGATTTCAGCAGATCAGGATTCGGTCCGCGCACTGTAATATTCTGCGATCAGTGTGAAAAAGAATATCATGTTGGCTGTTTAAGGGATCACAAGATGGCTTATTTGAAGGAATTGCCAGATGGGAATTGGTTTTGTTGCAATGATTGCTCAAGAATACATTCTAATTTGGAGAACCTCCTGGTTCAGGGGGATGAGAGACTCCCTGAATCTCTCTTACATGTTATAAAGAAGAAGCAAGAAGAAAGATGTTTAGAACCCCTCAATGAGATTGATATAAGATGGAGACTTCTTAATGGAAAAATTGCTTCTTCTGAAACTAGACCATTGCTTTTGGAGGCTGTGTCAATGTTTCGTGAATGCTTTGATCCTATAGTTGATGCAGCTACTGGACGTGACCTTGTTCCCCCCATGGTTTATGGAAGAAATGTGCAGACTCAGGATTTCGGAGGAATGTATTGTGCATTGTTAATGGTCAATTCATCTGTGGTATCGGCGGGTATGCTTCGAATTTTTGGTGGAGATATTGCAGAACTTCCTTTAGTTGCGACGGGTTTTAAGAACCGTGGAAAGGGCTACTTCCAAACACTGTTTTCCTGCATCGAGAGGCTGCTAGCTTTCTTGAATGTGAAGACCCTTGTGCTACCAGCTTCTGAAGAAGTCGCATCCATATGGACAGATAAATTTGGGTTTAGCATGATGAAACCTGACCAGCTCATTGACTATAGAAGGAACTGTAATCAAATGATGGCATTCAAAGGGACAATTATGCTTCATAAAGTGGTACCTCCATGTCAGGTCATCAATACTCAATCATGA 2478 0.4189 MDSVKSESESMITVNDSKGDVINGYIVYTRRKRTIPSHNGNEAKRIKTEEEKEEVEPNADDGNVEIEVKNEGGVFAESGGSIEVEVVQDDVVICRRGVETTRVAHRDKNVIVVNKKPLTVKELFDTGLVDGVPVIYMGNKKDQTSGLRGVIQDGGILCSCSICNRRRVIPPSQFEIHACNTYKRATEYICLENGKSLLELLRACRTAPLHTLEATIQNFVCSLPEEKYFTCKDCKACFPSSSGGRVGHLCCSCLESRKYFTCKICKACFPSSSEGRVGHLCYSCLESRKSEGSSIHTLGKRVRTPKVASELYISSKTKRHGKKRTMSTKLSVKSKTAPITSNSKCLSPRNKSQWRITKKYQRLHKLLFEDNGLPDGAALAYYARGQKLLEGIKRRSGIFCGCCNTEISPSQFEVHAGWDSRRKPYAYIYTSNGVSLHELAIFLSKDRQCTGKYKNDLCIVCWNGGKLLQCDGCSRSFHKECASLSSTPRGEWYCQICQNMFHSERSLALNVDAVAAGRVAGVDPIEQIVKRCIRIVKDNNIEAEISGCDLCRGSDFSRSGFGPRTVIFCDQCEKEYHVGCLRDHKMAYLKELPDGNWFCCNDCSRIHSNLENLLVQGDERLPESLLHVIKKKQEERCLEPLNEIDIRWRLLNGKIASSETRPLLLEAVSMFRECFDPIVDAATGRDLVPPMVYGRNVQTQDFGGMYCALLMVNSSVVSAGMLRIFGGDIAELPLVATGFKNRGKGYFQTLFSCIERLLAFLNVKTLVLPASEEVASIWTDKFGFSMMKPDQLIDYRRNCNQMMAFKGTIMLHKVVPPCQVINTQS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1000 825 ProSitePatterns Zinc finger PHD-type signature. 458 497 IPR019786 -
Lal12g1000 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 520 IPR013083 -
Lal12g1000 825 Pfam Tify domain binding domain 394 441 IPR032308 -
Lal12g1000 825 Pfam Tify domain binding domain 149 204 IPR032308 -
Lal12g1000 825 MobiDBLite consensus disorder prediction 37 59 - -
Lal12g1000 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 544 606 IPR013083 -
Lal12g1000 825 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 41 821 - -
Lal12g1000 825 SUPERFAMILY FYVE/PHD zinc finger 454 503 IPR011011 -
Lal12g1000 825 MobiDBLite consensus disorder prediction 37 53 - -
Lal12g1000 825 Pfam PHD-finger 458 499 IPR019787 -
Lal12g1000 825 SUPERFAMILY FYVE/PHD zinc finger 539 601 IPR011011 -
Lal12g1000 825 SMART PHD_3 547 604 IPR001965 -
Lal12g1000 825 SMART PHD_3 457 498 IPR001965 -
Lal12g1000 825 ProSiteProfiles Zinc finger PHD-type profile. 455 500 IPR019787 -
Lal12g1000 825 PANTHER AUTOIMMUNE REGULATOR 41 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1000 Lal-Chr12 8752342 8767636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1000 99 822 PHD Transcription Factor Family AT2G36720 49.933 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal12g1000 TDBD 7.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1000 - - gmx:100798276 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1000 12 8752342 8767636 Lal12g1000 12 8752342 8767636 ECH