Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0955 ATGGCTAACCAACCTGAATCCTCTGATTCTAAGGGAACGAAGAGGGACTATAGCACAGCGATCTTGGAGCGGAAGAAGGCGGCGAACCGTCTCGTTGTCGATGAAGCCGTCAACGATGATAACTCCGTCGTAGCGCTCCACCCTGACACCATGGAGAAGCTCCAGCTTTTTCGGGGCGATACTATTTTGATTAAGGTTCCGTGCTTAGCTGGATATCCTGGTTTCCAAACCCGAGGCATTGACTTAGTGGGAAAGAAAAGAAAAGATACAGTTTGTATTGCACTTGCTGATGACACATGTGATGAGCCAAAGATACGAATGAATAAGGTTGTGCGAAACAACCTCAGGGTTAGGCTTGGAGATGTTGTTTCTGTTCATCAATGTCCTGATGTCAAATATGGAAAGCGAGTCCACATTCTACCAGTTGATGACACTATTGAAGGGGTAACTGGCAATCTCTTTGATGCATACTTAAAACCTTATTTCCTGGAGGCATACCGGCCAGTGAGGAAGGGTGACTTTTTCCTTGTGAGAGGGGGGATGAGAAGTGTGGAATTCAAGGTTATTGAAACTGAGCCTGGTGAGTTTTGTGTTGTTGCTCCTGACACAGAGATCTTCTGTGAAGGAGAACCTATTAAAAGAGAAGATGAGAATCGATTGGATGAAGTTGGTTATGATGATGTTGGTGGAGTAAGAAAGCAGATGGCTCAGATTCGAGAACTTGTTGAACTGCCACTGAGGCATCCACAGTTATTCAAGTCTATTGGTGTTAAGCCACCAAAAGGAATTCTGCTTTATGGACCCCCTGGGTCTGGTAAGACTTTAATTGCCAGGGCAGTTGCAAATGAAACTGGTGCTTTCTTTTTTTGCATTAATGGCCCTGAGATCATGTCAAAACTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAGAAGAATGCACCCTCTATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGAGGGAGAAGACTCATGGTGAAGTAGAAAGGAGGATTGTTTCTCAGCTCTTGACCCTCATGGATGGGCTTAAATCGCGTGCACATGTAATTGTTATGGGAGCCACAAATCGTCCGAATAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGGTTTGATCGTGAGATAGATATTGGTGTTCCAGATGAAGTTGGACGTCTTGAGGTTCTTCGTATCCATACCAAGAATATGAAGCTTGCTGAAGATGTTGATTTAGAAAGGATTTCCAAGGACACCCATGGCTATGTTGGTGCTGATCTAGCTGCTTTGTGTACTGAAGCTGCACTTCAATGCATTAGAGAGAAAATGGATGTAATTGATTTGGAAGATGAGACCATTGATGCTGAGATACTGAACTCAATGGCGGTGACAAATGAGCATTTCCATACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCTAACGTTAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAGCACCCAGAAAAATTTGAGAAGTTTGGAATGTCTCCTTCTAAGGGGGTTCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTCTGGCAAAAGCAATTGCCAATGAGTGTCAGGCAAACTTCATCAGTATAAAAGGTCCCGAGCTACTCACAATGTGGTTTGGGGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCCCGTGGTTCTGCTCCATGTGTCCTGTTCTTTGATGAACTTGATTCTATTGCTACTCAGAGAGGCAGTAGTGTAGGTGATGCCGGTGGTGCTGCAGACAGGGTTTTGAACCAACTGCTTACAGAAATGGATGGGATGTCAGCAAAGAAGACTGTGTTCATCATTGGGGCCACTAATCGACCGGACATTATAGACCCTGCACTTTTGAGACCAGGCCGTCTAGATCAGTTGATTTATATACCCCTTCCAGATGAGGAATCCCGTCATCAGATATTTAAATCGTGCTTGAGAAAATCCCCCATCTCAAAAGACGTTGACCTTAGAGCTCTTGCCAGGTATACTCAAGGCTTCAGTGGCGCTGATATTACTGAGATTTGCCAGCGTTCATGCAAGTATGCCATAAGGGAGAACATTGAGAAGGACATTGAGAGAGAAAGGAGGAGAAAAGATAACCCGGAGGCTATGGAAGAGGACATTGAAGACGAAGATGTAGCAGAGATCAAGGCAGCTCACTTTGAAGAATCAATGAAATATGCGCGAAGGAGTGTAAGTGATGCTGACATTCGCAAGTACCAGGCGTTTGCCCAAACATTGCAGCAGTCAAGAGGGTTTGGAAGTGAGTTCAGGTTTGCAGATACCAGCTCTGGTGCTGGTGGTGCTGCCGCTGTGGCATCTGATCCTTTTGCAAGTGCTGGTGGAGCTGATGATGATGATCTTTACAATTAG 2487 0.4483 MANQPESSDSKGTKRDYSTAILERKKAANRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKVPCLAGYPGFQTRGIDLVGKKRKDTVCIALADDTCDEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETEPGEFCVVAPDTEIFCEGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFHTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQIFKSCLRKSPISKDVDLRALARYTQGFSGADITEICQRSCKYAIRENIEKDIERERRRKDNPEAMEEDIEDEDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADTSSGAGGAAAVASDPFASAGGADDDDLYN 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0955 828 CDD AAA 502 669 - -
Lal12g0955 828 ProSitePatterns AAA-protein family signature. 639 657 IPR003960 GO:0005524|GO:0016887
Lal12g0955 828 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 800 - -
Lal12g0955 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 783 IPR027417 -
Lal12g0955 828 SMART AAA_5 532 671 IPR003593 -
Lal12g0955 828 SMART AAA_5 259 395 IPR003593 -
Lal12g0955 828 Gene3D - 7 130 - -
Lal12g0955 828 Gene3D - 131 227 - -
Lal12g0955 828 SMART CDC48_2_2 148 214 IPR004201 -
Lal12g0955 828 Gene3D - 486 669 IPR027417 -
Lal12g0955 828 Gene3D - 394 485 - -
Lal12g0955 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 484 IPR027417 -
Lal12g0955 828 PANTHER AAA-FAMILY ATPASE 5 800 - -
Lal12g0955 828 Gene3D - 228 392 IPR027417 -
Lal12g0955 828 Pfam Cell division protein 48 (CDC48), N-terminal domain 80 129 IPR003338 -
Lal12g0955 828 SMART CDC48_N_2 30 131 IPR003338 -
Lal12g0955 828 CDD AAA 229 392 - -
Lal12g0955 828 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 91 786 IPR005938 GO:0016787
Lal12g0955 828 MobiDBLite consensus disorder prediction 801 828 - -
Lal12g0955 828 Pfam ATPase family associated with various cellular activities (AAA) 536 669 IPR003959 GO:0005524|GO:0016887
Lal12g0955 828 Pfam ATPase family associated with various cellular activities (AAA) 263 392 IPR003959 GO:0005524|GO:0016887
Lal12g0955 828 Pfam Cell division protein 48 (CDC48), domain 2 150 213 IPR004201 -
Lal12g0955 828 SUPERFAMILY Cdc48 domain 2-like 130 222 IPR029067 -
Lal12g0955 828 Pfam AAA+ lid domain 691 731 IPR041569 -
Lal12g0955 828 Pfam AAA+ lid domain 415 457 IPR041569 -
Lal12g0955 828 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Lal12g0955 828 Gene3D - 673 782 - -
Lal12g0955 828 SUPERFAMILY ADC-like 28 128 IPR009010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0955 Lal-Chr12 8263664 8268305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0955 465 796 Calmodulin-binding Proteins AT3G56690 42.470 2.25e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0955 K13525 - gmx:100814141 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0955 12 8263664 8268305 Lal12g0955 12 8263664 8268305 ECH