Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0949 ATGGAGGCTATCAACCACAGTAATGGTTACGTTGCAAGCAAAGATAATTCCACCTTCTGCTTGAGTAATACTAATGGGAGGGTTGTGGTTAGTGACCCACTGAACTGGGGTGTTGCTGCTGAATCACTCAAGGGGAGCCATTTGGATGAGGTGAAGCGTATGGTGGCGGAGTACCGGAAGCCAGTGGTCCGTCTAGGCGGAGAAACGCTTACGATATCTCAGGTGGCTGCCATCGCCGCCCATGACCAAGGGGTGAAGGTGGAGCTGTCGGAGTCAGCTAGGGCTGGTGTTAAGGCTAGCAGTGACTGGGTTATGGATAGCATGAATAAAGGCACTGATAGCTATGGTGTCACCACTGGGTTCGGTGCTACCTCTCACCGGAGAACCAAACAGGGCGGTGCTTTGCAGAAAGAGCTCATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGGACAGAGTCCAATTGCACCCTACCACACACAGCAACAAGAGCAGCAATGCTAGTGAGAATTAACACACTTCTCCAAGGGTACTCAGGTATTAGATTTGAAATCTTGGAAGCAATAACAAAGCTCCTTAACAACAACATCACCCCATGCTTGCCACTTAGGGGAACAATTACAGCTTCAGGTGACCTTGTACCCCTTTCCTACATTGCTGGGTTGCTAACTGGAAGACACAATTCCAAGGCTATGGGTCCCACAGGAAAGATCCTTAATGCCAAAGAAGCTTTTGAGTTGGCAAACATTGGTCATGAGTTCTTTGAGTTGCAACCCAAAGAGGGACTTGCCCTTGTGAATGGCACTGCTGTTGGTTCTGGCTTAGCTTCAATTGTTTTGTTTGATGCAAATGTATTAGCTGTTTTGGCTGAACTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAGCCTGAATTCACGGACCATTTGACTCATAAGTTGAAACACCACCCTGGTCAAATTGAAGCTGCAGCTATTATGGAACATATTTTGGATGGAAGCTCTTATGTGAAGGCTGCTAAGAAGTTGCATGAGACAGATCCACTTCAAAAGCCGAAACAAGATCGTTACGCACTTAGAACTTCACCTCAATGGTTAGGTCCTTTGATTGAAGTGATCAGGTTTTCAACCAAGTCAATAGAGAGGGAGATAAACTCGGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCTTGCATGGTGGTAATTTCCAAGGTACTCCTATTGGAGTATCTATGGATAACACACGTTTAGCTCTCGCGTCAATTGGGAAACTCTTGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGTTTGCCTTCAAATCTCTCTGCTAGTAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCAATGGCATCTTATTGTTCTGAGCTTCAATATCTTGCGAACCCGGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTCTTGGTTTGATTTCATCTAGAAAGACTAATGAATCTATTGAGATCTTGAAGCTCATGTCTTCCACTTTCTTAATCGCGCTTTGTCAAGCAATTGATTTAAGGCATTTGGAGGAGAATTTGAAGAACACTGTCAAGAACACTGTAAGCCAAGTTGCTAAGAGGACTCTTACTACAGGTGTCAATGGAGAACTTCATCCTTCAAGATTCTGTGAGAAAGATTTGTTGAAAGTTGTTGATAGGGAGTACTTATATACCTACATTGATGACCCTTGCAGTGGTACATACCCATTGATGCAAAAACTAAGGCAAGTGTTTGTGGATCATGCATTAGGAAATGCTGAAAGTGAGAAAAACTTGAACACATCAATCTTTCAAAAGATTGCTGCATTTGAGAATGAGTTTAAGGCTATTTTGCCAAAGGAGGTTGAAAGTACATGGGTTGCCTATGAGAATGGCCAATCTGTAATTCCAAACAAGATCAAGGAATGCAGGTCTTACCCATTGTACAAGTTTGTGAGAGAGGAATTGGGTACTGGGTTGCTGACTGGGGAAAAGTTAGTGTCACCAGGTGAAGAGTGTGACAAACTTTTCACAGCAATATGCCAAGGCAAAATTATTGACCCTATTCTTGAATGCCTTGGGGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAG 2172 0.4355 MEAINHSNGYVASKDNSTFCLSNTNGRVVVSDPLNWGVAAESLKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAAHDQGVKVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAMGPTGKILNAKEAFELANIGHEFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAVLAELISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYLYTYIDDPCSGTYPLMQKLRQVFVDHALGNAESEKNLNTSIFQKIAAFENEFKAILPKEVESTWVAYENGQSVIPNKIKECRSYPLYKFVREELGTGLLTGEKLVSPGEECDKLFTAICQGKIIDPILECLGEWNGAPLPIC 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0949 723 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 32 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lal12g0949 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841
Lal12g0949 723 Gene3D - 23 269 IPR024083 -
Lal12g0949 723 CDD PAL-HAL 68 533 IPR001106 -
Lal12g0949 723 Gene3D - 536 657 IPR023144 -
Lal12g0949 723 SUPERFAMILY L-aspartase-like 32 723 IPR008948 GO:0003824
Lal12g0949 723 Gene3D Fumarase/aspartase (Central domain) 270 718 - -
Lal12g0949 723 PANTHER HISTIDINE AMMONIA-LYASE 23 723 IPR001106 -
Lal12g0949 723 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 23 723 - -
Lal12g0949 723 Pfam Aromatic amino acid lyase 70 546 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0949 Lal-Chr12 8084350 8090877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0949 32 723 Monolignol Biosynthesis Gene Families AT2G37040 84.104 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0949 K10775 - gmx:100302735 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0949 12 8084350 8090877 Lal13g0139 13 899843 904899 ECH
Lal12g0949 12 8084350 8090877 Lal24g0130 24 943984 948590 ECH
Lal12g0949 12 8084350 8090877 Lal12g0949 12 8084350 8090877 ECH