Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0948 ATGTCTACCTCTGCAGCTTCTCTAGCACTTCCATTTCTTTCTCTCCGTACCTTAAAACATCAACAACATCTATGTTTTTCTTCACTCTCCCTTTTTAACCCTAATTCCAATCCCATCTCCATTTCTGCAACCTTTCTCCGTTCCTACGCCGCACAGCGTCCAACGTTGTCGTCGTCTCGCTTCGTTTCCAACGTTTCCCTCTCCGAGTTCGACCAGGAAGAGGACACGTTTAGCGAAGGAGATGACGAACCCAGTTACAACAATAATAACAACAACAGCAATGAATTAAAACTTTTCGTCGGTAACCTTCCCTTCGGTGTTGACAGTGCTCGACTCGCTGAGATTTTCGAAGGCGCTGGTGATGTTGAAAGGGTTGAGGTGATTTATGATAAAATGACTGGGAGAAGTAGAGGATTTGGTTTTGTGACTATGTCTTCAGCTGAGGAAGTTGAAGCAGCTGTTCAGCAGTTCAATGGATATGAAGTGGATGGAAGGGAGCTAAGAGTGAATTCTGGACCACCTCCTCCTCGGGATGAGAATTCTAGGTATGGGAATTCTCGATTTGATGGGAATTCCCGTTTTGGTAGGAGTCCTCCCAGAGGAGGAGATTCTGCTGCAGATAATGGAAATCGAGTTCATGTAGGTAATCTATCATGGGGTGTTGACGAGGGAGCACTTGAGGAATTGTTTGGGGAACATGGAAGGGTTTTGGAAGCAAAAGTAATATATGACAGGGAAACTGGAAGATCAAGAGGCTTTGGGTTTGTGACCTACAGTTCCCCCGAAGAGGTCAACAAAGCTGTTCAGTCCTTAGATGGTGTGGACTTGAATGGCAGAGCTATTCGTGTCTCACTGGCAGATGCTAAGCCCCCTAGACGTCAATTTTGA 888 0.4572 MSTSAASLALPFLSLRTLKHQQHLCFSSLSLFNPNSNPISISATFLRSYAAQRPTLSSSRFVSNVSLSEFDQEEDTFSEGDDEPSYNNNNNNSNELKLFVGNLPFGVDSARLAEIFEGAGDVERVEVIYDKMTGRSRGFGFVTMSSAEEVEAAVQQFNGYEVDGRELRVNSGPPPPRDENSRYGNSRFDGNSRFGRSPPRGGDSAADNGNRVHVGNLSWGVDEGALEELFGEHGRVLEAKVIYDRETGRSRGFGFVTYSSPEEVNKAVQSLDGVDLNGRAIRVSLADAKPPRRQF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0948 295 Gene3D - 65 203 IPR012677 -
Lal12g0948 295 Gene3D - 204 295 IPR012677 -
Lal12g0948 295 CDD RRM_HP0827_like 97 170 - -
Lal12g0948 295 SMART rrm1_1 211 284 IPR000504 GO:0003723
Lal12g0948 295 SMART rrm1_1 97 170 IPR000504 GO:0003723
Lal12g0948 295 MobiDBLite consensus disorder prediction 164 210 - -
Lal12g0948 295 SUPERFAMILY RNA-binding domain, RBD 207 294 IPR035979 GO:0003676
Lal12g0948 295 CDD RRM_HP0827_like 211 286 - -
Lal12g0948 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Lal12g0948 295 SUPERFAMILY RNA-binding domain, RBD 87 203 IPR035979 GO:0003676
Lal12g0948 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Lal12g0948 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 168 IPR000504 GO:0003723
Lal12g0948 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 282 IPR000504 GO:0003723
Lal12g0948 295 MobiDBLite consensus disorder prediction 72 92 - -
Lal12g0948 295 PANTHER OS02G0815200 PROTEIN 1 292 - -
Lal12g0948 295 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0948 Lal-Chr12 8038412 8042005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0948 98 295 Eukaryotic Initiation Factors Gene Family AT3G16380 29.293 1.33e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0948 - - lang:109360912 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0948 12 8038412 8042005 Lal12g0948 12 8038412 8042005 ECH