Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0938 ATGGGCAACGTTGGAAGTAGTAGCGGGGTTAACAACCGTCGTAGATCTAGCGGCAGTAGCAGTGGGCGACGGATTCATCCGCCGCCTCCGCCACCAGTGACGTCTCAGCCGGAAACCACGGCTAACCGGTACATGTACCCGGCGTCTGCCACCATGCCGTATCACAACTACCCTGGCTACTATCCCCCTCCACCGCCAACTATGCCGTTGCCGTTGCCAGCTCCGTATGACCACCACCACCACCACCGTCCGGTGATGGACCCAATGTGGGGGCGCTACCCGCAGCCGCAGCTGCAAGTGCCGCTACCACTACCTATGCCCTACGTGGAACACCAGAAAGCGGTTACAATAAGGAACACTGTTAACATCAAGAAGGAGACTTTGAGGATTGAGCCTGATGAAGAGAATCTTGGGCGTTTCGTTGTGTCGTTTGTGTTTGATGCCACCATTGATGGAAGGTTCAAAGTTTTGGAGAGCTTGTTGGATAGGAATAGGATGCTGTTAGAGTTAAGTGAAGAAATCATGTATTCTATTTTGCATGAACTGGTTTTGCTTTCTTTTTATCTCCATAACAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGAAGGTTGCATCCTTAAACCAATGAAGGAAAACACTCTTCCACCTGTGACTATAAAATTTCAGCAAGGTCTTGGGCAGAAGTTTAAACAGCCTGCTGGAACTGGTATCGACTTTTCAATATTTGAGGAGTCTGAGCTGTTGAAAGTGATTGACATGGATGTCTATCCTCTAGCCGTTAAGGCAGATTCATCCTCTCATGAAGGTGATGGATCAAATGAAAGTCCAACATCGGGTAGCACAAACTTGCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGTGAGTTCCTTGTGAAGGTTGTAAAACAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAGCAGAGAGTGACTTGGATGGAAATGACCCAGGGAAAGAGTGTGTTATCTGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCCTGCCGTCACATGTGCATGTGTAGTGGATGTGCTAAGGTTTTGAGGTTCCAGACAAACAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTCTCGAGATCAAAGTGGGTCCAGAGCCTGAAGAGTGA 1188 0.4806 MGNVGSSSGVNNRRRSSGSSSGRRIHPPPPPPVTSQPETTANRYMYPASATMPYHNYPGYYPPPPPTMPLPLPAPYDHHHHHRPVMDPMWGRYPQPQLQVPLPLPMPYVEHQKAVTIRNTVNIKKETLRIEPDEENLGRFVVSFVFDATIDGRFKVLESLLDRNRMLLELSEEIMYSILHELVLLSFYLHNSITILFFAKEGEGCILKPMKENTLPPVTIKFQQGLGQKFKQPAGTGIDFSIFEESELLKVIDMDVYPLAVKADSSSHEGDGSNESPTSGSTNLQITQAVFEKEKGEFLVKVVKQILWVNGMRYELQEIYGIGNSAESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0938 395 PANTHER MAHOGUNIN 189 395 IPR045194 GO:0061630
Lal12g0938 395 PANTHER MAHOGUNIN 1 157 IPR045194 GO:0061630
Lal12g0938 395 ProSiteProfiles Zinc finger RING-type profile. 339 378 IPR001841 -
Lal12g0938 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 388 IPR013083 -
Lal12g0938 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 189 395 - -
Lal12g0938 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 157 - -
Lal12g0938 395 SUPERFAMILY RING/U-box 338 384 - -
Lal12g0938 395 SMART ring_2 339 377 IPR001841 -
Lal12g0938 395 MobiDBLite consensus disorder prediction 1 23 - -
Lal12g0938 395 MobiDBLite consensus disorder prediction 1 39 - -
Lal12g0938 395 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 338 378 IPR045195 -
Lal12g0938 395 Pfam Zinc finger, C3HC4 type (RING finger) 337 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0938 Lal-Chr12 7913012 7919587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0938 102 357 C3H Transcription Factor Family AT3G09770 55.939 1.40e-91 277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0938 12 7913012 7919587 Lal12g0938 12 7913012 7919587 ECH