Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0933 ATGGGGAGGAATCGAAATTGGTTTTCGTCTGTGAAGAAAGCTCTCAGCCCTGAGCCAAAGGAGAGTAAAGATCAGAAGTCAAGCAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGAGGCATACTCCGAAACCAATAAAGCACCCTTTCTTCCTGCACCGGAGGAGATTACTTTAACTCATGTTGAGAATGAAGACAGTAATGATCATGTTGTTGAAGTTGCAACTGTCTTAGAGGCAGAGGAACCTGTTCTTGATGATCATACAGAAGCTGCTAAGGTTCAAGTCACTGCAGTTGATCACTTTACCGACAAACCTAAGGATGAAGTGGCGGCAATGAGGATTCAAACAGCTTTTCGTGGATACATGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTAAAGTCACTGATGGAAGGGCAAGTTGTAAAACGCCAAACCATTAGTACCCTTCGCTCTATTCAGTCTTTTGCTCATTTACAAACTCAGATTCATTCTAGGAGGCTCAGGATGTTAGAGGAGACACAAGCTCTGCAGAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGCTCGGGGAGGAATGGGATGACAGTCTACAATCCAAAGAACAAATTGAAGCCAAGTTACTATGCAAGTACGAGGCCGCAACAAGAAGAGAAAGAGCACTGGCTTATTCATACTCTCATCAGAAAAATGGGAAGAATTCGTCTAGATCTATAAATCCAATGTTCATGGATCCAACCAATCCGTCATGGGGTTGGAGCTGGTTGGAACGATGGACGGCAGCCCTGCCTTGGGAGAGCCATAGTTTGATGGAGAAAGAAAAAAATGCCAATTCATCGGTAAAAATTTCAACCCGTGGCATTACCAGTGCTGAAATCAGCAAATCGTTTGCTCGTTTCCAGCTCAATTCTGAAAAGCATTCTTCAACAGCGAGCCAAACTCCAGGCTCTCCGAGCTTTCAGTCCCATTCAAGTCTTCCGAAGCCGGCTTCTGCAGCAATTGCTAAGAAACTGAAGAAGCCGAGCCCGAAGGACAGTTGGGTAATAGATGATGACACGAAAAGCATGGTCAGTATGCAGTCAGAGCGGTTTCGGAGGCACTCCATTGCAGGGTCAACAATGAGAGATGATGAAAGCGTTGCAAGCTCTTCAGCACTTCCAAGTTACATGGTACCAACTAAATCTGCAAAAGCTAAGTCCAGGATGCAAAGTCCATTAGCCATAGAGAGTGGCACCCCTGAGAAGGTTACTGTTGGGACTGCAAATAAAAGACTCAGTTTCCCAGCATCACCTGCCAGACCAAGGTGGCATTCTGATCCACGAAAGGTCGAAAACAGCGTAACTGCCGAAATCACCGTGGGAAATGGCGTGGCTGGTTGA 1416 0.459 MGRNRNWFSSVKKALSPEPKESKDQKSSKSKKKWFGKQKLQTSEAYSETNKAPFLPAPEEITLTHVENEDSNDHVVEVATVLEAEEPVLDDHTEAAKVQVTAVDHFTDKPKDEVAAMRIQTAFRGYMARRALRALRGLVRLKSLMEGQVVKRQTISTLRSIQSFAHLQTQIHSRRLRMLEETQALQKQLLQKHAKELESMRLGEEWDDSLQSKEQIEAKLLCKYEAATRRERALAYSYSHQKNGKNSSRSINPMFMDPTNPSWGWSWLERWTAALPWESHSLMEKEKNANSSVKISTRGITSAEISKSFARFQLNSEKHSSTASQTPGSPSFQSHSSLPKPASAAIAKKLKKPSPKDSWVIDDDTKSMVSMQSERFRRHSIAGSTMRDDESVASSSALPSYMVPTKSAKAKSRMQSPLAIESGTPEKVTVGTANKRLSFPASPARPRWHSDPRKVENSVTAEITVGNGVAG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0933 471 MobiDBLite consensus disorder prediction 316 362 - -
Lal12g0933 471 MobiDBLite consensus disorder prediction 16 31 - -
Lal12g0933 471 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Lal12g0933 471 PANTHER IQ-DOMAIN 5-RELATED 1 466 - -
Lal12g0933 471 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 466 - -
Lal12g0933 471 MobiDBLite consensus disorder prediction 316 340 - -
Lal12g0933 471 MobiDBLite consensus disorder prediction 1 53 - -
Lal12g0933 471 SMART iq_5 111 133 IPR000048 GO:0005515
Lal12g0933 471 Pfam IQ calmodulin-binding motif 115 133 IPR000048 GO:0005515
Lal12g0933 471 Pfam Protein of unknown function (DUF4005) 319 445 IPR025064 -
Lal12g0933 471 MobiDBLite consensus disorder prediction 407 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0933 Lal-Chr12 7857020 7861919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0933 1 470 IQD Protein Family AT5G03040 48.750 6.79e-133 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0933 - - gmx:100801847 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0933 12 7857020 7861919 Lal12g0933 12 7857020 7861919 ECH
Lal12g0933 12 7857020 7861919 Lal24g0862 24 7006378 7012489 LSH
Lal11g1146 11 15173882 15177489 Lal12g0933 12 7857020 7861919 PCT
Lal1g1828 1 20607535 20611714 Lal12g0933 12 7857020 7861919 PCT
Lal20g0082 20 536142 540096 Lal12g0933 12 7857020 7861919 PCT
Lal12g0933 12 7857020 7861919 Lal11g1146 11 15173882 15177489 PCT
Lal12g0933 12 7857020 7861919 Lal1g1828 1 20607535 20611714 PCT
Lal12g0933 12 7857020 7861919 Lal20g0082 20 536142 540096 PCT