Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0930 ATGGGTAAGACACGTGGAATGGGAGCGGCTCGCAAGTTGAAGTCCCACCGCAGGAGGCAAAGGTGGGCAGACAAGTCATACAAGAAATCTCATCTTGGTAATGAATGGAAGAAGCCATTTGCTGGGTCATCTCACGCAAAGGGTATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAATTCTGCCATTCGAAAGTGTGCCAGAGTTCAACTCATCAAAAATGGTAAGAAGATTGCTGCTTTTGTCCCCAACGATGGTTGCTTAAACTACATTGAAGAGAATGATGAAGTTTTGATTGCCGGATTTGGACGTAAAGGTCATGCCGTGGGAGATATTCCTGGTGTCAGGTTCAAGGTTGTGAAGGTCTCTGGTGTCTCTCTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAA 429 0.4569 MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0930 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal12g0930 142 MobiDBLite consensus disorder prediction 1 30 - -
Lal12g0930 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Lal12g0930 142 Gene3D - 25 142 IPR012340 -
Lal12g0930 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal12g0930 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal12g0930 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lal12g0930 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal12g0930 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lal12g0930 142 MobiDBLite consensus disorder prediction 9 25 - -
Lal12g0930 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0930 Lal-Chr12 7812231 7814064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0930 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 2.17e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0930 K02973 - fve:101303309 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0930 12 7812231 7814064 Lal12g0930 12 7812231 7814064 ECH
Lal12g0930 12 7812231 7814064 Lal13g1147 13 8798532 8800300 LSH
Lal12g0930 12 7812231 7814064 Lal24g0858 24 6973770 6982012 LSH
Lal20g0080 20 528368 530309 Lal12g0930 12 7812231 7814064 PCT
Lal12g0930 12 7812231 7814064 Lal20g0080 20 528368 530309 PCT