Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0926 ATGTCTGAACTACCGGCGAGTCCTGGCGGCGGCGGTGGAGGAAGCAATGAAAACGGAGACCATAGTCCTCGCTCTAATCACCGAGAGCAGGATAGGTTCCTTCCTATCGCTAACATAAGTCGAATCATGAAGAAGGTTCTTCCACCTAATGGAAAAATCGCCAAGGATGCTAAGGATACTGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGCCAGAGAGAAAAGAGGAAGACCATTAATGGTGATGATTTGCTATGGGCAATGGCTACACTAGGCTTTGAGGATTATATTGATCTTCTCAAGATTTACCTCGCCAGATACAGAGAGGTAGTTCACTTCACTACTTCATTGCCTATTGCTCTATATGCTATAAGAAGTTTGGTTGCACTTTTTTCTACCATATTTGCATACATTTATGTCATGGTTTGTCGTACTGTGCTATGCCAGGGTGATACCAAGGTTTCGGCCAAGGGAGGAGATGCATCTTCCAGGAAAGATGTTCACCCAAGCCCTAATGCTCAGGTGGAGTGTGTATATACATATACTGTGCCTGGTTACACTGTTCGAAATTTTCATCATCAAGGTTCTTTCTCACAAGGTCAAGGTGTTGATTACACAAATTCTCAGTATATTGAATGA 666 0.4369 MSELPASPGGGGGGSNENGDHSPRSNHREQDRFLPIANISRIMKKVLPPNGKIAKDAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDLLKIYLARYREVVHFTTSLPIALYAIRSLVALFSTIFAYIYVMVCRTVLCQGDTKVSAKGGDASSRKDVHPSPNAQVECVYTYTVPGYTVRNFHHQGSFSQGQGVDYTNSQYIE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0926 221 MobiDBLite consensus disorder prediction 1 30 - -
Lal12g0926 221 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lal12g0926 221 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lal12g0926 221 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Lal12g0926 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 218 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal12g0926 221 SUPERFAMILY Histone-fold 30 121 IPR009072 GO:0046982
Lal12g0926 221 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal12g0926 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Lal12g0926 221 Gene3D Histone, subunit A 19 124 IPR009072 GO:0046982
Lal12g0926 221 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 7 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0926 Lal-Chr12 7776026 7779315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0926 20 218 CCAAT-HAP3 Transcription Factor Family AT3G53340 56.500 3.86e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal12g0926 CBFD_NFYB_HMF 2.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0926 K08065 - gmx:100798667 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1141 11 15141275 15142859 Lal12g0926 12 7776026 7779315 PCT
Lal12g0926 12 7776026 7779315 Lal11g1141 11 15141275 15142859 PCT