Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0917 ATGGGTTGGATTCCATGTTCTGGAATTTCAAAAACTAAGAAGAAGATAAAGAAGAAGATGATTGAAGTTAAGGAAAGCATAGTTGATCCAATTAGAACAACCCCAGGGAAAATGAAAAGGAATGCCTCCATGAATTCTAAAGATTCCTGTAAAAATGGGAACACTGATCATATTGCTGCACAAACATTCTCATTCGGTGAATTGGCAACAGCAGCTAGAAATTTTAGAGCAGAATGTCTTTTAGGCGAGGGTGGCTTCGGTAGAGTATACAAAGGACATTTGGAAAATATTAAGCAGATTGTTGCAATTAAGCAACTTGATCGAAATGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCCAACCTTGTCAACCTAATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCTTTGGAAGACCACTTACATGATATTACTCCTAGCAAAAATCGACTTGACTGGAACACAAGAATGAAAATAGCTGCTGGGGCAGCACGGGGATTAGAATATCTACATGACATAGCTAACCCTCCGGTCATTTACCGAGATTTAAAGAGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGGCCAGTTGGAGAAAACACCCATGTATCAACAAGAGTTATGGGTACCTATGGATATTGTGCTCCTGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTACTTCTGGAAATAATTACCGGAAGGAAAGCCATTGATGATTCAAAATCTGCAAGAGAGAAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGAACGTAGAAAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCACCGAGAGGGCTATACCAGGCCCTAGCTGTTGCCGCAATGTGTGTTCAGGAGCAGGCCAGTATGCGTCCGGTAATAGCCGATGTAGTTACAGCTTTGAGTTACCTTGCTTCACAAAGATATGACACCGATACATAG 1086 0.4052 MGWIPCSGISKTKKKIKKKMIEVKESIVDPIRTTPGKMKRNASMNSKDSCKNGNTDHIAAQTFSFGELATAARNFRAECLLGEGGFGRVYKGHLENIKQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDITPSKNRLDWNTRMKIAAGAARGLEYLHDIANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKSAREKNLVAWARPLFKERRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQASMRPVIADVVTALSYLASQRYDTDT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0917 361 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 360 - -
Lal12g0917 361 CDD STKc_IRAK 81 349 - -
Lal12g0917 361 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Lal12g0917 361 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0917 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lal12g0917 361 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Lal12g0917 361 Gene3D Transferase(Phosphotransferase) domain 1 152 360 - -
Lal12g0917 361 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0917 361 PANTHER OS07G0668900 PROTEIN 1 360 - -
Lal12g0917 361 Pfam Protein tyrosine and serine/threonine kinase 79 347 IPR001245 GO:0004672|GO:0006468
Lal12g0917 361 SUPERFAMILY Protein kinase-like (PK-like) 57 349 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0917 Lal-Chr12 7633498 7637188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0917 29 354 Glycoside Hydrolase AT3G07070 67.485 2.48e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal12g0917 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0917 - - gmx:100776041 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0917 12 7633498 7637188 Lal13g1140 13 8722915 8726007 LSH
Lal20g0075 20 499686 503620 Lal12g0917 12 7633498 7637188 PCT
Lal12g0917 12 7633498 7637188 Lal20g0075 20 499686 503620 PCT