Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0912 ATGGCGCATCGGTTGCTGAGAGATCACGAAGCCGACGGATGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGTCCCTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCTTTTACTGTTTTTAGATGGAGACCTGGCCGGGATGCAAGATATAAGAAGTCTGAGATCTGCCAGACATGTAGCAAATTGAAAAATGTTTGTCAGGTGTGCCTTCTGGATCTTGAATATGGACTACCGGTACAAGTCCGTGATACAGCTCTCAGTATTGATTCTAATGATGCTATTCCCAAGAGTGATGTTAATAGGGAGTATTTTGCAGAAGAGCATGACCGCAAGGCTAGAGCTGGTATAGATTATGAGTCTTCTTATGGTAAAGCACGCCCAAATGATACTATTCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGAGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTTAATGATCCAGTGGCATTAAAGCTACTTGGGAAGGCAGGAGAGATGTCCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCAAGGGTCACTGAGCAGGATTTGCGAGATCACTTCTATGCCCATGGTGAAATCGAATCTATCAAAATGGTTCTGCAGCGGGCTTGTGCTTTTGTGACCTATACAACCAGAGAAGGCGCCGAAAAGGCAGCTGATGAACTCTCCAACAAACTGGTTATCAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGTCGGCGAAACCTGAGTTGGATGCCTCCGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAGCCAGGACCAGAACCAAGGCATGGTTTACTATGGCAATCCACCTCCTCAACAGGAAAGAAGCTATTACCCATCCATGGATCCTCAAAGAATGGGTGCTCTTGTTACATCTCAAGAGGGTCCTCCTGGGGGACCCTCTGGGTCAGGGGAGAACAAACCCGGTATAGAGAAGCAGCAAATGCAACATTATGCCCATTCAAAAATGCCCCCACCACCAGGCCAATATCATCATCAGTATTATCCTCCATATGGCTATATGCCACAAGTTCCCCCTTATCAACAACGGTACCCACCACCACCACCACCACCACCATATAATGCTCCAATGCCTCCATCCCAACCACCAGCTATAAATCATCCCTATCAGCATTCTATGCAGCCAGGGTCTTCACAGGCAGGGTCTGGTCAGGGTGGCTCTGTCCCGCCGGAAGCTGGAACATCGACATCAGGGTCACATCAGCAGTGA 1470 0.4816 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAADELSNKLVIKGLRLKLMWGRPQSAKPELDASDQARQQASVAHSGLLPRAVISQQQSQDQNQGMVYYGNPPPQQERSYYPSMDPQRMGALVTSQEGPPGGPSGSGENKPGIEKQQMQHYAHSKMPPPPGQYHHQYYPPYGYMPQVPPYQQRYPPPPPPPPYNAPMPPSQPPAINHPYQHSMQPGSSQAGSGQGGSVPPEAGTSTSGSHQQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0912 489 MobiDBLite consensus disorder prediction 333 489 - -
Lal12g0912 489 SUPERFAMILY RNA-binding domain, RBD 221 306 IPR035979 GO:0003676
Lal12g0912 489 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lal12g0912 489 MobiDBLite consensus disorder prediction 333 359 - -
Lal12g0912 489 Gene3D - 149 209 - -
Lal12g0912 489 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 464 - -
Lal12g0912 489 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 464 IPR039171 GO:0003723
Lal12g0912 489 Pfam Torus domain 138 194 IPR032297 -
Lal12g0912 489 MobiDBLite consensus disorder prediction 453 489 - -
Lal12g0912 489 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Lal12g0912 489 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Lal12g0912 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lal12g0912 489 Gene3D - 212 308 IPR012677 -
Lal12g0912 489 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lal12g0912 489 CDD RRM_RBM22 227 300 - -
Lal12g0912 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Lal12g0912 489 MobiDBLite consensus disorder prediction 419 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0912 Lal-Chr12 7566220 7572492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0912 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 35.000 3.66e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0912 K12872 - gmx:100779917 802.357