Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0905 ATGGAAGAAACAACAGCAACAATCATGGCTGCACTCTCCACCCTCACATCTTCCCATCTCTCAGATCTTACAAACACTATCCTCTCCGCCACCCACCACCGCCTCCACCGCCTCTCCTTCCTCCTCTCTTCCCCTACCCTTTTTTCTTTAAGCCTTCATCATCTCCACAAACTCTCCCTCCATCAAAAGACCCTCCTCATTGCCCGCCACCTCCTCTCCTCCCTCCACCACCTGACCCGCCACCTCATATCATCATCTCCGTCGCCTTTGTCCACTTCCATGAGACAACGTGAGACTGATGCTGTGTTACTACTACTCCTGTTCTGTGACACACACAAACACAACCCTGAAGCCTTGGATGCACCCCATTCAAAGTGGAGGGTGAACATGTGCAAGCTCTACTCTCATAATCTCTTAAACCTTTCTTCTTCTTCATTCATACCCTTTGGGACATGTTCAGGGACAATCTTGATCCCTTATATTGAGATGCTGGCACGGTGCTGGAGGATGGTGGAAGCAATGGGTTGTGGTGGTGGTGGTGGTGGAGGGAAGGAAGTGGGGGAGGTGGCGGCAGCAGTGGCGGCAGTGGTTGCTCTTCCGGCGGTGGAGGTGGTGGTTGGTGGTAAAGAATGCGTGATATGCAAAGAGGAGATGAGAATTGGGAGGGATGTGTGTGAGTTGCCATGTCAACATTTGTTTCATTGGAGCTGCATATTGCCTTGGTTTGCGAAGAGGAACTCGTGTCCTTGCTGCAGGTTCAGGCTACCGTCCGATGATGTCTTTGGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATGGGTGGGAAAGAATACTTAGGATGA 846 0.5106 MEETTATIMAALSTLTSSHLSDLTNTILSATHHRLHRLSFLLSSPTLFSLSLHHLHKLSLHQKTLLIARHLLSSLHHLTRHLISSSPSPLSTSMRQRETDAVLLLLLFCDTHKHNPEALDAPHSKWRVNMCKLYSHNLLNLSSSSFIPFGTCSGTILIPYIEMLARCWRMVEAMGCGGGGGGGKEVGEVAAAVAAVVALPAVEVVVGGKECVICKEEMRIGRDVCELPCQHLFHWSCILPWFAKRNSCPCCRFRLPSDDVFGEIQRLWEVLVKMGGKEYLG 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0905 281 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Lal12g0905 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 263 IPR013083 -
Lal12g0905 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 276 - -
Lal12g0905 281 SMART ring_2 211 251 IPR001841 -
Lal12g0905 281 SUPERFAMILY RING/U-box 206 257 - -
Lal12g0905 281 Pfam Ring finger domain 209 252 IPR001841 -
Lal12g0905 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0905 Lal-Chr12 7492532 7493377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0905 2 273 C3H Transcription Factor Family AT5G02750 50.357 3.43e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0905 - - pvu:PHAVU_007G161400g 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0905 12 7492532 7493377 Lal13g1125 13 8576150 8576971 LSH