Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0904 ATGGAAAATGAGTGTATTTTGGGTCACTTCGATTACTCGATTGATTATGCAATTTTGGCTGTTGTGTTTGTTGATAATGTCATTTTGGTTTTTGCAGCAATAATGCCTCGCTATGATGATAAATACGCCAATACTCGCCTCTATGTCGGTAAGCTGTCATCTAGGACCCGTTCCCGGGATCTGGAGCGAGCCTTCAGCAGATATGGAAGAGTCCAAGATGTGAATATGAAGCAGGATTTTGCCTTTGTTGATTTTAGCGATCCCCGAGATGCTGATGATGCAAGATATCACTTGGATGGCCGTGATTTTGATGGTAGTCGTATTATTGTGGAATTTGCGAAGGGGGCTCCTCGTGGTTCCCGAGAATATCAAGGTAGAGGTCCACCTCCTGGAACTGGCCGCTGCTTTAACTGTGGCCTTGATGGTCATTGGGCACGAGATTGCAAAGCTGGGGACTGGAAGAACAAGTGCTACCGATGTGGGGATAGAGGTCATATAGAACGAAACTGCAAGAATAGTCCCAAAGCGTTCAGACGTGGACGGAGTTATTCACGTTCACCAGTCAGATCACGTTCTCCTCATCGGCGTCACAGCCGCAGCTACAGTCGATCCCCAGTCAGAAGAGCACGGAGTCCTGTTCGTGAAGATCGATCAGAGAGCCCTCGCTACAGAAGCCCGGTGACCAAAAGCAGTCTCCCACCAACCAGGACAAGGAGGCATAGTCCATCACCTGATGATGCCAGCCCACATAAAAGCAATGGTGCATCTCCTAGCAATGGTATCTTGGCTACTCAGCAAGATGGGTCTGACTACAGCAACGGTGGTCGTAGAGAGGGGAGTGGAAGCCCTGCTAGCCCAATAAGGGATGTTGAAGATAGGGACTATACTAGCCCCAAAAACAATGGGAACAGCCGTAGCCCTAGCCCTAGCCCTAGCCCTAGGGATGACAGGAGCCCCATTGAGGACGAGGGTCGTTCGCCAAGAGGAAGTGAGTCAGCCTGA 1002 0.499 MENECILGHFDYSIDYAILAVVFVDNVILVFAAIMPRYDDKYANTRLYVGKLSSRTRSRDLERAFSRYGRVQDVNMKQDFAFVDFSDPRDADDARYHLDGRDFDGSRIIVEFAKGAPRGSREYQGRGPPPGTGRCFNCGLDGHWARDCKAGDWKNKCYRCGDRGHIERNCKNSPKAFRRGRSYSRSPVRSRSPHRRHSRSYSRSPVRRARSPVREDRSESPRYRSPVTKSSLPPTRTRRHSPSPDDASPHKSNGASPSNGILATQQDGSDYSNGGRREGSGSPASPIRDVEDRDYTSPKNNGNSRSPSPSPSPRDDRSPIEDEGRSPRGSESA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0904 333 MobiDBLite consensus disorder prediction 169 333 - -
Lal12g0904 333 MobiDBLite consensus disorder prediction 247 279 - -
Lal12g0904 333 ProSiteProfiles Zinc finger CCHC-type profile. 156 172 IPR001878 GO:0003676|GO:0008270
Lal12g0904 333 ProSiteProfiles Zinc finger CCHC-type profile. 134 149 IPR001878 GO:0003676|GO:0008270
Lal12g0904 333 MobiDBLite consensus disorder prediction 208 223 - -
Lal12g0904 333 SMART rrm1_1 46 111 IPR000504 GO:0003723
Lal12g0904 333 Gene3D - 117 178 - -
Lal12g0904 333 SUPERFAMILY Retrovirus zinc finger-like domains 125 173 IPR036875 GO:0003676|GO:0008270
Lal12g0904 333 MobiDBLite consensus disorder prediction 224 238 - -
Lal12g0904 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 108 IPR000504 GO:0003723
Lal12g0904 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 115 IPR000504 GO:0003723
Lal12g0904 333 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Lal12g0904 333 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Lal12g0904 333 MobiDBLite consensus disorder prediction 315 333 - -
Lal12g0904 333 MobiDBLite consensus disorder prediction 182 204 - -
Lal12g0904 333 Pfam Zinc knuckle 155 172 IPR001878 GO:0003676|GO:0008270
Lal12g0904 333 Pfam Zinc knuckle 134 149 IPR001878 GO:0003676|GO:0008270
Lal12g0904 333 Gene3D - 35 116 IPR012677 -
Lal12g0904 333 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 40 315 - -
Lal12g0904 333 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 40 315 - -
Lal12g0904 333 SUPERFAMILY RNA-binding domain, RBD 40 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0904 Lal-Chr12 7481132 7484150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0904 40 104 Eukaryotic Initiation Factors Gene Family AT2G23350 34.722 5.52e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0904 K12896 - zju:107435609 364.77