Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0889 ATGACCATGATGAAGAGAATGAGAGAAAATGAAGAAAAAGAAACCATAACTTTGGCAAATAGTCTTATGCTGTTAACAAAGTCAATGAATAAAAGTTATGTTCCAATGGAATTTGAGTGCAAAACATGCAACAAAAAATTCTCATCATTTCAAGCATTGGGTGGACATAGAGCTAGCCATAAGAAACAAAAACTCAATGAGGATCAAGAATTGAGATCAAATTCTAAGAAGGCCAAGATGCATCATGAGTGCATCATTTGTGGTCAAGAATTCTCTTTGGGTCAAGCACTTGGAGGACACATGAGAAAACATAGAGCTTCTTCAACTAATGAAGGGTTTTATTCTCTTAACAATGTTATTGCTAAGGTTCCAGTTTTGAAAAGATCAAATAGTAAGAGGGTTATGTGTTTGGACTTGAACTTGACACCATTGGAAAATGACTTGAAGTTGTTGTTTGGAAACAAAGCACCTCAAGTTGATATCTCTTTGTTCTAA 495 0.3475 MTMMKRMRENEEKETITLANSLMLLTKSMNKSYVPMEFECKTCNKKFSSFQALGGHRASHKKQKLNEDQELRSNSKKAKMHHECIICGQEFSLGQALGGHMRKHRASSTNEGFYSLNNVIAKVPVLKRSNSKRVMCLDLNLTPLENDLKLLFGNKAPQVDISLF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0889 164 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Lal12g0889 164 Pfam C2H2-type zinc finger 81 106 - -
Lal12g0889 164 Pfam C2H2-type zinc finger 38 63 - -
Lal12g0889 164 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lal12g0889 164 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 158 - -
Lal12g0889 164 PANTHER ZINC FINGER PROTEIN ZAT5 4 158 - -
Lal12g0889 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Lal12g0889 164 SUPERFAMILY beta-beta-alpha zinc fingers 38 104 IPR036236 -
Lal12g0889 164 SMART c2h2final6 38 60 IPR013087 -
Lal12g0889 164 SMART c2h2final6 82 104 IPR013087 -
Lal12g0889 164 Gene3D Classic Zinc Finger 36 104 - -
Lal12g0889 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0889 Lal-Chr12 7334260 7334754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0889 4 161 C2H2 Transcription Factor Family AT2G37430 49.143 1.72e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0889 zf-C2H2_6 2.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0889 - - lang:109338093 247.669