Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0886 ATGGCAGCGGCACGGCGCCTCGGCGACCTTCAATCCGAACCTGGCAACAACATCTGCGTCGATTGCTCCCAGAAGAACCCTCAATGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTCGAATGCTCCGGCAAGCACCGTAGCCTCGGCGTTCACATTTCCTTTGTACGATCCGTTAACATGGATTCTTGGTCCGAAATCCAGATCAAGAAAATGGAAGCTGGTGGCAATGACAAACTCAATGAGTTCCTTGCACGTTACGAAATCCCTAAGGAAATCGATATAGTTACGAAATATAACACCAATGCAGCTTCTGTGTATAGGAATCGAATCCAAGCGATCGCTGAAGGTCGCGGGTGGCGCGATCCTCCTGTCGTTAAGGAGATTCTCAAGGGAAAGCAGACCGGTGGTGGTGGCGGTGGTGGTGAAGGTACAGGTGGAGGTTTTCGTAGGAACAACGGAGGGTGGGATGATGATTGGGGTAACGATGATGGTTTTGGGAATTCTGGCGATATTAGACGTAATCGTTCGACGGGGGATTTCAAGAAAGGCGTAGGTGGTGGCGGAGTGATGCCGGTGAGGTCGAGGTCGACGACGGACTTTGCCAGATCGGAATGGGAAGCTTCAGCGGCGAACAAGGAGAGTTTTTTTGCCAGGAAGATGGCGGAGAATGAATCAAGATCCGAAGTGCTTCCACCGTCGAAGGGTGGAAAATATGTTGGGTTCGGATCGAGTCCTACGTTTTCTTCTCACAGGAGCAACCAGCAAAACGATTATTTTTCTGTCGTTTCTCAGGGGATTGGTAAATTGTCGTCGGTTGCTGCCTCTGCTGCTCAAGATATCACTTCTAAGGTGAAAGAAGGTGGTTATGATGACAAGGTGAATGTTGTCTCTCAGAAAACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTCTTGGCTTTGGCTTCACAGAAGGTTGAGGAGTTGGCTTCAGATACTCCAAAGAATGGTAACTTGCAGAGAAATGAGAATGATATTAATGTTCATCACAATCAGAATTTCAATCAAGAGAACAAAGGGTGGAATTCTTCTATGAGAAAAGAACAATCTTCATCAGGGCAATTTAAAACTCATAGTTCAACAAGCTCTTGGGATGATTGGGGCAACACAGATAGTAAGAAGGAAGAACCAGCTAAAGATGATGATTGGTCTGGTTGGGATGATGCCAAAGATGATGGATTTGATATATTTTATAAAGGTGCATCTAATAGGAAAGGTTCTGCTCATGACAAAGAATCAGATTCAACCTGGTCAAGGGGTGGCTTTCACTAA 1323 0.4679 MAAARRLGDLQSEPGNNICVDCSQKNPQWASVSYGVFMCLECSGKHRSLGVHISFVRSVNMDSWSEIQIKKMEAGGNDKLNEFLARYEIPKEIDIVTKYNTNAASVYRNRIQAIAEGRGWRDPPVVKEILKGKQTGGGGGGGEGTGGGFRRNNGGWDDDWGNDDGFGNSGDIRRNRSTGDFKKGVGGGGVMPVRSRSTTDFARSEWEASAANKESFFARKMAENESRSEVLPPSKGGKYVGFGSSPTFSSHRSNQQNDYFSVVSQGIGKLSSVAASAAQDITSKVKEGGYDDKVNVVSQKTSEIGQRTWGIMKGVLALASQKVEELASDTPKNGNLQRNENDINVHHNQNFNQENKGWNSSMRKEQSSSGQFKTHSSTSSWDDWGNTDSKKEEPAKDDDWSGWDDAKDDGFDIFYKGASNRKGSAHDKESDSTWSRGGFH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0886 440 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Lal12g0886 440 CDD ArfGap_ArfGap1 3 117 - -
Lal12g0886 440 Gene3D Arf GTPase activating protein 2 124 IPR038508 -
Lal12g0886 440 MobiDBLite consensus disorder prediction 350 384 - -
Lal12g0886 440 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lal12g0886 440 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lal12g0886 440 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lal12g0886 440 Pfam Putative GTPase activating protein for Arf 6 99 IPR001164 GO:0005096
Lal12g0886 440 MobiDBLite consensus disorder prediction 350 440 - -
Lal12g0886 440 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 439 IPR044519 GO:0005096|GO:0016192
Lal12g0886 440 MobiDBLite consensus disorder prediction 130 195 - -
Lal12g0886 440 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Lal12g0886 440 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 84 IPR001164 GO:0005096
Lal12g0886 440 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 439 - -
Lal12g0886 440 MobiDBLite consensus disorder prediction 385 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0886 Lal-Chr12 7301378 7308792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0886 6 88 C2H2 Transcription Factor Family AT3G07940 50.000 1.06e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0886 K12492 - gmx:100806519 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0886 12 7301378 7308792 Lal12g0886 12 7301378 7308792 ECH
Lal12g0886 12 7301378 7308792 Lal13g1083 13 8154782 8160179 LSH
Lal12g0886 12 7301378 7308792 Lal24g0816 24 6456968 6462609 LSH
Lal11g1113 11 14859034 14863235 Lal12g0886 12 7301378 7308792 PCT
Lal12g0886 12 7301378 7308792 Lal11g1113 11 14859034 14863235 PCT