Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0878 ATGAATCATGATTTCTATAATTTTTCTTCTGTTTCAACAACTGAATTTGATGCTGATGATCATATTGATAGAAAATTAAATGGACTACCCATTAATTTTCTTATAGGTCTAAACATAATGTCTAAAGAAAAAGATACCAATCATAACCCTTCAAATTTAGTTGCTAAATTAATGGGCATTGAAGCATTTCCTAGTGAAGAGACTAATTTAGCTATGGAAAGAAGAAGCCTTAACAAAGATTATTCACAACATTTGTATGGTATTCATATAGGGTCACCATTCATTAAGGAAATGTCAATGTTTCATGAATTTGTTCATGCAAGGACAGAACATGTTTCATACAAGGATATTTATGAAGATGTTGTTGAGGGAAAAATTGCTCTCATTCATCAGAAGTACATGGATGCAAAAAAAATGTCTAGTGATGAAAGATTCCGTAGGTCGAAGCGATTCGAAGATGCCTTGGAAGTTTTCTGCTCCAATAGTGATCTCTTAATCAAGTTACTGGATGAACTTCACTGTGACAAACCTTTGAACATGAAGCCAGAAAATGTTGATGAGGACAAGAATAGTGAATATTCTTCTTCAGAAAGTAAGGAAGTAATTGATGAGTTTTCAGTTCAATGTACTAGAATAGTGGCACTGAAGCCTAGCTGTGAAGAAATAAATGAGTTGGTTTTTCCAATAACTTCACAAAGTATAAATTTCCAAAGTGAACCTGAAACATTATGTTCTTCACTCTTTTCCAATGTAAGTGATGAGAGTTCATTTAAGAAAGCAGAACATGATGATTTTGAAGCTATGCCAACATTGGATAACATCAATGAATGTGGTGGTGACAGTGCTTATTCTAATGAGTCATTAGTGTACAAAGAAGCCAAGAAAAGAATTTCTGAAAGATGGACAATGATGGCATCAAATATTAAACTTGTTCAAGAACAAAGGCATATGAAGAGAAATTCTACTTTGGGTGAGATGCTTTCTCTTTCACATGATGAAGAACAAAAAGCAACTAAATTTGTTTCTTGCAGTGATTCTTCTATAGATGAGGAAATAAGCATTCATTGTTTTCCTAAAACTCTTCCTATGTCATGTAATGTTACTGTTTCTTCTGATTCTGATGATGTTGGAATAGCACATGGCTCCAAAGTGGTGACAAAGACAAAGAGTGTGAAATTATCACTAAAAGGGAAAGTTATGAGTTTCTTGTTCTCAATGAATAAGAAACCAACAAAGGAAAAATCTAGTATTTCTCAATCTTCTGTCACTGAAACAACAGTGTCTTCAGTAAATTCACCTGAACTCCTTAGTGATGATGTGTTTCAAAGCTTTAACAGATTTGAAGAGTGTTCTCTTCAATCTCTATGTGGGTCATTAACAAAAACATCATCAGATTATGTCTCTAATGGAAAACAACAAGGGAGAATTACCCCAAAGCATTCTGATTGGTCTGGTACAAGAAGTTTTGGATTAACTGTGTCAAAGAGCATGGTGGCAGAGATTTCAAGTGAAAACCAGGATCAGCCAAGTCCAATCTCAGTTTTAGATACTCCATTTGAAGATGATAATGCTGCTCATGATTCCTTGGACTATATGAAGGGATCAAGGGTGCCTTTGAAGAGCAATTTAATTGACAGATCACCGCCTATAGAATCAATAGCTAGAACCCTATCATGGAATGATTCATGTTCAGAAGTAGCAAGCTCATATTCATTCAAACCCATGACGATTTCTTCCTTAAACACCAAGATAGAGGAACAAGATTGGCTTCTCCTAGTCGAAAAACTACTATCAGCATCCGGACTTGACGATCAAGTACAATTCAACTCGTTTAAGACAAGATGGCATTCCCTTGAAAGCCCATTAGCTCCATCACTAAGAGACAAATATGCCTATAGTTTCAATGGCAAGGATTCTCTCCATGAGGCCATGAGAAGGAAAATGAGATCAAGCCAAAAGCTTGTGTTTGATTGTGTCAATGCTACCCTATTGGAAATAACTAGTGATTATGGGTCAGAAAAGTACTTCTCAAAGAACAAGATATACAATGCAGCCCACATAGTCCAAGATGGTGCATGTTCACCCTATTTGGTGGATCACATTGTGGCCCAAATGAAGAAATTAATAGCTAGTGAAGTGAGGTATGTTTGGGGAGATTGTGAGTATAGTAACAGGTTGGTAGTGGAAAATGTTGTTAGAAAAGAAGTTGTGGGGATAGGGTGGGATGAACTTATGAGATTGGAGGTTGATATTTTGGAGAGGGAAATAGAGAGAGATTTGATAGAAGAGCTTGTGGAAAATTCTGTGGCTGATTTCTTAGGCAGGGCCTGA 2331 0.3599 MNHDFYNFSSVSTTEFDADDHIDRKLNGLPINFLIGLNIMSKEKDTNHNPSNLVAKLMGIEAFPSEETNLAMERRSLNKDYSQHLYGIHIGSPFIKEMSMFHEFVHARTEHVSYKDIYEDVVEGKIALIHQKYMDAKKMSSDERFRRSKRFEDALEVFCSNSDLLIKLLDELHCDKPLNMKPENVDEDKNSEYSSSESKEVIDEFSVQCTRIVALKPSCEEINELVFPITSQSINFQSEPETLCSSLFSNVSDESSFKKAEHDDFEAMPTLDNINECGGDSAYSNESLVYKEAKKRISERWTMMASNIKLVQEQRHMKRNSTLGEMLSLSHDEEQKATKFVSCSDSSIDEEISIHCFPKTLPMSCNVTVSSDSDDVGIAHGSKVVTKTKSVKLSLKGKVMSFLFSMNKKPTKEKSSISQSSVTETTVSSVNSPELLSDDVFQSFNRFEECSLQSLCGSLTKTSSDYVSNGKQQGRITPKHSDWSGTRSFGLTVSKSMVAEISSENQDQPSPISVLDTPFEDDNAAHDSLDYMKGSRVPLKSNLIDRSPPIESIARTLSWNDSCSEVASSYSFKPMTISSLNTKIEEQDWLLLVEKLLSASGLDDQVQFNSFKTRWHSLESPLAPSLRDKYAYSFNGKDSLHEAMRRKMRSSQKLVFDCVNATLLEITSDYGSEKYFSKNKIYNAAHIVQDGACSPYLVDHIVAQMKKLIASEVRYVWGDCEYSNRLVVENVVRKEVVGIGWDELMRLEVDILEREIERDLIEELVENSVADFLGRA 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0878 776 Pfam Protein of unknown function (DUF3741) 131 170 IPR022212 -
Lal12g0878 776 Pfam Domain of unknown function (DUF4378) 593 766 IPR025486 -
Lal12g0878 776 PANTHER DUF3741 FAMILY PROTEIN 39 171 - -
Lal12g0878 776 PANTHER DUF3741 FAMILY PROTEIN 241 775 - -
Lal12g0878 776 PANTHER DUF3741 FAMILY PROTEIN 180 238 - -
Lal12g0878 776 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 241 775 - -
Lal12g0878 776 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 39 171 - -
Lal12g0878 776 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 180 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0878 Lal-Chr12 7219001 7223231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0878 25 772 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 29.075 1.91e-74 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0878 - - lang:109332380 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0878 12 7219001 7223231 Lal12g0878 12 7219001 7223231 ECH
Lal11g1106 11 14781444 14788206 Lal12g0878 12 7219001 7223231 PCT
Lal1g1867 1 20940379 20945752 Lal12g0878 12 7219001 7223231 PCT
Lal20g0044 20 314397 318956 Lal12g0878 12 7219001 7223231 PCT
Lal12g0878 12 7219001 7223231 Lal11g1106 11 14781444 14788206 PCT
Lal12g0878 12 7219001 7223231 Lal1g1867 1 20940379 20945752 PCT
Lal12g0878 12 7219001 7223231 Lal20g0044 20 314397 318956 PCT