Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0861 ATGTCTGTTAGTGCTGCCCAGGTGGGTTCATACTTTGTTGGACAGTACTATCAAGTTCTTCCACAACAACCCAGTTTGGTTCATCAGTTTTACTCTGATAACAGTTCTATGATTCGTGTTGATGGAGATTCTTCTCAAACTGCTCATGATGTTTTGCAAATTCATGAACTTGTCATGACACTGAATTTTGTTTCAATAGAGATCAAGACAATCAATTCTCTTGATTCTTGGGATGGAGGTTTGGTTGTAATGGTCTCAGGTTTTGTCAAGATCAAGGATATCAGTCGGAGGCGAAAGTTTTTCCAGACCTTCTTTCTTGCTCCCCAGGAGAAAGGTTACTTTGTACTGAATGATATCTTTCATTTTATCGACGATGAAGTAACGTACCCAAATCTGGGATCAGTTGCGTCGGAAAAGTTTGAGACACAACCTCATCTTTCTAATTCTGTTGCCGAGCCACCTGCTTCAGACTATGGTTTTGAGGAAGAGGTTAGGGAATATGTCAACTCAGTTCATATAGAAGATGATCCAGTGGACAAGTATAGTGTTCCAGAATTGCAGCAGCTACAGCAAGATCATGAAACTGAAGTTGCAGTGGAGGAAACGCCTGCAGAGGAGGTATCTCCAGTAATTCCAAGTGTTTCTCATACCATCCATGAAGCCCCTGTTGCGTATGTGGAGGAACCTTTGGAAGAGCCTCCTAAGAAAACTTGGGCATCAATTTTACAAAAAGGTCAATCTGTGTTATCTCCTGCTCTGCAATCAACTTATAAAAGCGCCCCTGCTCCTTCAGTGTTTAATCATGTTGCGCAGCCTGCTGAACAAAGCTCCCCATCTACATTTGTTCCCGATTATGGGGTTGATGCAACAGAGGATGGCTATGGAGTAGTGGAAGAAGGTGAAGTAAAATCGGTCTATGTGAGAAACTTGCCTGCTAATGTTACTGAAGCTGAAATTGAGCAGGAATTTAAGAACTTTGGCAGAATTAAGCCCAATGGAATATTCATCAGGGTCCGGCAGGAAATTGGAGTTTGCTATGCTTTTGTGGAATTTGAAGACATTCTTGGTGTTCATAATTCCCTTCAGGCTTCTCCCATACAATTGGCTGGAAGACAAATATACATAGAGGAGCGTAGACCAAACAGTGGCGTTGCAGCTCGGGGAGGAAGAGGAAGGGGAAGAGGCAGAAGCAGTTATCAAACAGATGCTCCAAGGGGGCGTTTTGGTGGCAGGGGCTCAGGCAGGGGAATTTATCAGGATACTGCTGACCATAACAGGCTAAGAGGTGATGGTTATACTCAGCGCGGTTCCCGATAA 1317 0.4358 MSVSAAQVGSYFVGQYYQVLPQQPSLVHQFYSDNSSMIRVDGDSSQTAHDVLQIHELVMTLNFVSIEIKTINSLDSWDGGLVVMVSGFVKIKDISRRRKFFQTFFLAPQEKGYFVLNDIFHFIDDEVTYPNLGSVASEKFETQPHLSNSVAEPPASDYGFEEEVREYVNSVHIEDDPVDKYSVPELQQLQQDHETEVAVEETPAEEVSPVIPSVSHTIHEAPVAYVEEPLEEPPKKTWASILQKGQSVLSPALQSTYKSAPAPSVFNHVAQPAEQSSPSTFVPDYGVDATEDGYGVVEEGEVKSVYVRNLPANVTEAEIEQEFKNFGRIKPNGIFIRVRQEIGVCYAFVEFEDILGVHNSLQASPIQLAGRQIYIEERRPNSGVAARGGRGRGRGRSSYQTDAPRGRFGGRGSGRGIYQDTADHNRLRGDGYTQRGSR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0861 438 SUPERFAMILY NTF2-like 4 123 IPR032710 -
Lal12g0861 438 Pfam Nuclear transport factor 2 (NTF2) domain 8 122 IPR002075 -
Lal12g0861 438 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 4 433 IPR039539 -
Lal12g0861 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Lal12g0861 438 ProSiteProfiles Nuclear transport factor 2 domain profile. 8 122 IPR018222 -
Lal12g0861 438 PANTHER GB|AAD20086.1 4 433 - -
Lal12g0861 438 CDD NTF2 4 124 IPR018222 -
Lal12g0861 438 MobiDBLite consensus disorder prediction 380 438 - -
Lal12g0861 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 362 IPR000504 GO:0003723
Lal12g0861 438 Gene3D - 296 425 IPR012677 -
Lal12g0861 438 Gene3D - 1 127 - -
Lal12g0861 438 CDD RRM_SF 305 376 - -
Lal12g0861 438 SUPERFAMILY RNA-binding domain, RBD 301 411 IPR035979 GO:0003676
Lal12g0861 438 SMART rrm1_1 304 376 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0861 Lal-Chr12 7047339 7055709 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0861 12 7047339 7055709 Lal12g0861 12 7047339 7055709 ECH
Lal12g0861 12 7047339 7055709 Lal13g0683 13 4423537 4427250 LSH
Lal12g0861 12 7047339 7055709 Lal24g0529 24 3714627 3721037 LSH