Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0860 ATGGCACCCAATCCGAAAGTAGTTGCGGCTTTTCGGGCAATGTCAGCTCTTGGCATAACTGAATCGCAAGTGAAACCGGTATTGAAGAAACTCCTTAAGTTGTATGATAAAAATTGGGAACTTATTGAAGAAGAGAACTATAGAGCTCTTGCAGATGCAATATTTGAGGCTGCCGAACATCCGGTGCCAGAACAGAAAAAGAAAAGCAAGAATGTTCATCAAGAAGAGATGGATGATGAAGAAGCTCAGATGCATGTTGAGTCGGCCCAATCTTTGAAAAGGTCGCATTTAAGAGGCCAAGACAGTCGGTCTTGGAATCCTCTTGCAAATATCAGCCCAGGCTCAGCCGGTTCTCCGTTAAAAAAACCTAAATTAGAAGGGGACATATTACCTGAGAGTAGTTCCAGACAACAGCCTCAAAACACAGCACTGTCATCTGATATAAATGTGAGGACTGAACCACGACCAATTCCACCACATGATGGTACGGTTGACAGAGGAAAGCAACCTGTATCACCCCAAGTTGCTCCTAGACGAAGAAGGTTAATAACTGAAAGGGAAAGAGCAGCTTTATCAGCACAATCTAAAGAACCAACAGTTGAACCACGAATGCGTCCCCTGCCAAACAACAAAATGCCTTATAGTCATGCAGTGATCATACCCAAGGATGAACCTATTGATGAATTGCATGATTATGCGGTTCCCATTGCAATGATCCCCCCTGAACCATCAAGCGTGAGGGACTTGCCAATGATGAATGGCTCTGCGAGAAAGCGAGATGGCCATGTCACCAAGGCGTCATTGCAATTTAGAGATGAAACAGTTAGAGATGAAGATATCCATCCTTCCTCAAATGAAGAAGCAACTTCTACTGTAGAGATAGCCTCTTCAACTATGGGAGAGGTAAAAATTTCTCTGAGGTGCAGCTTTGCTGTTGGTAGACCTGAATTTCGTATGCCCAGTCAAGATCAAATTCTACAGATGATGGAGGAAAAATGTCTGCGGTCATATAAAATCACTGACCCGGAATTTTCTGTCCCGAAATTTTTGAAAGATATATGTGATTGCATGTTGGAATTCAGAAATGATTCAAATGATGACTCACAGAAAGAATTCAGGACATCATCCAATGTTGATGTGATGAAGGAATCTGATGCTCATGGCATTCTAAGCGGCCGGGGAAATGAAGATCCAAACATGCTTTCTCACACTTCCAATGGATCAATCAATGTTAAGTCTTCTGCTGCCTTGGTTTCACCCCAAAGTCCCTTTTCTGTAGCGGAGATGAGTGGTCTGGATGATGCTGTACGGGCTTCCCAAAAGGGCAAAACAACCGATATCTTAGAAAGTAATTACAGTAAGGAGCCTGAGGATCCCATGTCTCCAAAATCACATAGTTTAGCGGTTGTTCCACAGCATAATCAGCTTACAGATATTAGGTCCATTCATGATGTTAATGATCTTACAAAAGGAGAAGAAATTGTTCAAATTTCATGGATGAATGATACTACAAATGATTTCCTACCACCTTTTTACTACATACCCCAAAATCTTGTGTTCCGAGATGCTAATGTTAGCATTTCTCTATCTTGTATTGGGGGTGAGGACTGTTGTCCAACTTGTATGGGCAATTGTGTCCTTTTGTCTACACAATGTGCTTGTGCAAATAAAACTGGAGCTGAATTTGCATACACTGCTGAAGGACTACTGAAGGAAGATTTCTTGGAAGAGTGCATTTCCATCAGCCACAACCCTCAACAACATTACTTCTATTGCAAAGACTGCCCACTAGAAAGATCTAAGGATGATGGTTGTTTAGAACCATGTAAGGGACACTTAAAGAGGAAATTTATTAAAGAATGTTGGACCAAATGTGGCTGTGGGAAACAGTGTGGCAATCGGGTTGTTCAACGAGGAATAACTGGCAAATTTCAGGTATTTTTCACTCCAGAAGGAAAAGGTTGGGGTCTTCGTACCTTGGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGGGAAATTTTAACCACTGAAGAGCTGAATGAGAGAAACATGAAATGCACTGGAAATGGGAACTACACATACCCATTTCTACTGGATGCAGATTGGGATTCAGGGTTTGTGAAGGATGAAGATGCTCTATGCTTGGACGCGGCATCTTTTGGTAACATTGCCAGGTTTATCAATCACAGATGTTTTGACGCAAACTTGGTTGAGATCCCAGTCGAAATTGAGGGCCCTGGTCACCATTACTATCATTGTGCCTTTTTCACTTCCAGAAAAATAGTAGCACAGGAGGAGCTCACTTGGGATTATGGCATTGACTTCGATGACAGTGATCATCCTGTTAAGCTTTTCCAGTGTAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCCACTAGATCTGCTTCAGCTGCAAGTTCATAA 2448 0.4216 MAPNPKVVAAFRAMSALGITESQVKPVLKKLLKLYDKNWELIEEENYRALADAIFEAAEHPVPEQKKKSKNVHQEEMDDEEAQMHVESAQSLKRSHLRGQDSRSWNPLANISPGSAGSPLKKPKLEGDILPESSSRQQPQNTALSSDINVRTEPRPIPPHDGTVDRGKQPVSPQVAPRRRRLITERERAALSAQSKEPTVEPRMRPLPNNKMPYSHAVIIPKDEPIDELHDYAVPIAMIPPEPSSVRDLPMMNGSARKRDGHVTKASLQFRDETVRDEDIHPSSNEEATSTVEIASSTMGEVKISLRCSFAVGRPEFRMPSQDQILQMMEEKCLRSYKITDPEFSVPKFLKDICDCMLEFRNDSNDDSQKEFRTSSNVDVMKESDAHGILSGRGNEDPNMLSHTSNGSINVKSSAALVSPQSPFSVAEMSGLDDAVRASQKGKTTDILESNYSKEPEDPMSPKSHSLAVVPQHNQLTDIRSIHDVNDLTKGEEIVQISWMNDTTNDFLPPFYYIPQNLVFRDANVSISLSCIGGEDCCPTCMGNCVLLSTQCACANKTGAEFAYTAEGLLKEDFLEECISISHNPQQHYFYCKDCPLERSKDDGCLEPCKGHLKRKFIKECWTKCGCGKQCGNRVVQRGITGKFQVFFTPEGKGWGLRTLEDLPKGAFVCEFVGEILTTEELNERNMKCTGNGNYTYPFLLDADWDSGFVKDEDALCLDAASFGNIARFINHRCFDANLVEIPVEIEGPGHHYYHCAFFTSRKIVAQEELTWDYGIDFDDSDHPVKLFQCRCGSKFCRNMKRSNRSTRSASAASS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0860 815 Gene3D SET domain 475 801 IPR046341 -
Lal12g0860 815 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 815 IPR025776 -
Lal12g0860 815 MobiDBLite consensus disorder prediction 61 100 - -
Lal12g0860 815 Gene3D - 1 60 IPR043017 -
Lal12g0860 815 MobiDBLite consensus disorder prediction 131 149 - -
Lal12g0860 815 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 302 - -
Lal12g0860 815 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 373 811 - -
Lal12g0860 815 CDD SET_SETDB-like 509 775 - -
Lal12g0860 815 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Lal12g0860 815 Pfam Pre-SET motif 489 634 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal12g0860 815 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 302 - -
Lal12g0860 815 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 373 811 - -
Lal12g0860 815 MobiDBLite consensus disorder prediction 437 465 - -
Lal12g0860 815 ProSiteProfiles SET domain profile. 642 775 IPR001214 GO:0005515
Lal12g0860 815 ProSiteProfiles Pre-SET domain profile. 527 639 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal12g0860 815 SMART set_7 642 781 IPR001214 GO:0005515
Lal12g0860 815 MobiDBLite consensus disorder prediction 61 209 - -
Lal12g0860 815 SMART preset_2 485 626 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal12g0860 815 Pfam SET domain 654 775 IPR001214 GO:0005515
Lal12g0860 815 SUPERFAMILY SET domain 496 798 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0860 Lal-Chr12 7027892 7035647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0860 618 800 C2H2 Transcription Factor Family AT2G23740 40.212 1.31e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal12g0860 Pre-SET 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0860 - - gmx:100778335 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0860 12 7027892 7035647 Lal12g0860 12 7027892 7035647 ECH
Lal12g0860 12 7027892 7035647 Lal13g0718 13 4693629 4697698 LSH
Lal12g0860 12 7027892 7035647 Lal11g1083 11 14503762 14511761 PCT