Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0849 ATGGATCATGTGATTGGGGACAAGTTCAAACTGGAAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATTTAGCTGTTGATGTACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGACATCCGCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTGAAGGAGGAACGGGGATTCCCCAACTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTCATCGACCTTCTTGGACCAAGTCTTGAAGATTTGTTCAACTATTGCAACCGGAAGTTCACATTGAAGACAGTTTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGCTTCCTTCACCGTGACATTAAGCCAGACAATTTTCTAATGGGCCTAGGACGGAAGGCAAATGAGGTGTACATCATTGACTATGGTCTTGGAAAAAAATATCGGGATCTTCAGTCTCATAGACACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTAGAATCTCTTGGTTATGTGCTCATGTACTTCTTACGAGGAAGTCTTCCGTGGCAGGGTCTCAGGGCTGGCAACAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAGGTGTCAACTTCCGTAGAGGTGCTCTGTAAATCATATCCCTCTGAGTTTGGGTCATACTTCCACTATTGCCGATCATTGCAGTTTGAGGACAAGCCAGATTATTCATATTTGAAGAGACTTTTCCGAGATCTTTTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTGTATTGAAGCGTCCAGAAATAGGTGGCAACTCTAGAGGGAGGCATGGCACTGGCAAGGCAGCTATGAATGTAGGTCAACCTGTACAAAAACCCGAAAAGATCTCAGGTGGGAGAGAGGTTCGAGAGAAATTCTCTGGTGCTGTTGAAACATTCTCCCGGAGGAACCCTGCAGGTGCTACTCCTCTTGTTGAAACTCACTCCCGGAGGAACCCTGCAGGAGCTACTCCTTTTGTTGAAACTTACTCCCGGAGGAACCCTGCAGGTGCTACCCCTATTGTTGATCGTTCCAAATATAGGACGTCCGACGATGTAGCAGTATACAAGGATATGCACCATGCACAACATGGTCAAGCTCGATATGCCAGCAGTTCAAGAAGAGCCCTAATTTCATCGAACAAGCAAATTTCCTCAGGCGACCATACTGGCAGGCTGACCTCAAGTGGTGGCCGACAAACGACCGCACATAGAATGTATGACACCAAACAAGCAACTTTGACTCGCAATGGATCCATTAAAGGCAACCGAGACGATCCTCTACGGAGCTTTGAGCTCCTTAATATCAGGAGGTAG 1443 0.447 MDHVIGDKFKLERKIGSGSFGELYLAVDVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLEGGTGIPQLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANEVYIIDYGLGKKYRDLQSHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISEKKVSTSVEVLCKSYPSEFGSYFHYCRSLQFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKRPEIGGNSRGRHGTGKAAMNVGQPVQKPEKISGGREVREKFSGAVETFSRRNPAGATPLVETHSRRNPAGATPFVETYSRRNPAGATPIVDRSKYRTSDDVAVYKDMHHAQHGQARYASSSRRALISSNKQISSGDHTGRLTSSGGRQTTAHRMYDTKQATLTRNGSIKGNRDDPLRSFELLNIRR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0849 480 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal12g0849 480 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 452 - -
Lal12g0849 480 MobiDBLite consensus disorder prediction 423 444 - -
Lal12g0849 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal12g0849 480 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lal12g0849 480 Gene3D Transferase(Phosphotransferase) domain 1 1 330 - -
Lal12g0849 480 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0849 480 PANTHER CASEIN KINASE-RELATED 1 452 - -
Lal12g0849 480 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0849 480 MobiDBLite consensus disorder prediction 348 382 - -
Lal12g0849 480 CDD STKc_CK1_delta_epsilon 8 282 - -
Lal12g0849 480 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0849 Lal-Chr12 6956300 6962890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0849 1 331 EF-hand Containing Proteins AT2G38910 23.919 1.72e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal12g0849 Pkinase 3.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0849 K08960 - gmx:100789031 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0849 12 6956300 6962890 Lal12g0849 12 6956300 6962890 ECH
Lal12g0849 12 6956300 6962890 Lal13g1043 13 7717108 7724207 LSH
Lal1g1881 1 21104336 21112106 Lal12g0849 12 6956300 6962890 PCT
Lal12g0849 12 6956300 6962890 Lal1g1881 1 21104336 21112106 PCT