Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0848 ATGGCTTCAGCAAGGAGTTGGCTTCAGAGGTTGCAGCCTCGGGATAAAATGAGGGCGGGTTCAAAGAAGAAGGAGGAGGATAGTGATAGTAATAATAACGGAGATTCAAATGCGCCCGTGGATGAAGTCACAAAGCAGAAGGTTGCAGCTGCAAAACAGTATATTGAAAACCATTACAAGGAGCAAATGAAGAATCTTCAAGAAAGGAAGGAACGTCGAGCAGTCTTGGAAAATAAGTTGGCTGATGCTGACGTCTCTGAAGAGGATCAAAACAACCTGTTTAAGTTTTTAGAGAAAAAGGAAACTGAGTATATGCGCCTTAAGAGACATAAGATGGGTGCAGGTAATTTTGAGTTGCTGACCATGATTGGCAAAGGTGCATTTGGGGAGGTCAGAGTCTGCAGGGAGAAGACTACAGGTCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTCATATCTGAAAGGAATCTCCTTGCGGAGGTTGACAGCAATTGCATCGTCAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTGTATCTTATTATGGAATATCTACCGGGTGGGGATATGATGACTCTTCTTATGAGAAAGGATACCTTGACTGAAGATGAAGCTAGGTTTTATGTAGGAGAAACAGTTCTGGCTATTGAGTCTATACATAAACGCAATTATATACACAGGGATATCAAGCCCGATAACTTATTACTTGATAGATATGGACACTTGAGACTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGATCACTTGAAGAAAAGGATTTTTCTATGGGTCAGAATGTAAACGGAACTAGATTTACACAGAATGATGAACATGCTGCTCCAAAACGCACACAACAAGAACAACTGCAACACTGGCAACAAAATAGGAGGACACTGGCTTATTCCACAGTTGGTACACCAGACTATATTGCTCCCGAAGTTCTGTTGAAGAAAGGCTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGAACCAATGACAACATGTAGGAAGATTGTAAACTGGAAATCTCACTTGAAATTTCCTGTAGAAGCAAGGCTATCCCCAGAGGCTAAAGATCTCATTAGTAAACTTTTGTGTAATGTCAGCCATAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAGGCTCATCCATTCTTTGAAGGTGTTGACTGGAATAAGCTATATCAAATGGAAGCTGCATTTATTCCTGAGGTCAAGAATGAGTTAGATACTCAGAATTTTGAAAAATTTGAAGAGTCTGACAACCAAACTAAAACAGCAGCAAGGACTGGTCCGTGGAGGAAGATGCATTCATCTAAGGATTTGAATTTTGTTGGATACACATACAAGAATTTTGAAATTGTCAACGATTATCAAGTTCCTGGGACAACTGAATTGAAGAAGAAACCCTCCAAACTAAAGAGGCCATCAATCAAATCACTTTTTGAAACACCGGAGGTACCCGAGGTTTCTGATACATCATCTCCAAGCAACAAATCTGCTCAAGGAAGCTTTTTAAAACTATTGCCACCTCAATTAGAGGTATCTAAAAGTGGCAAGAGTCTTCCTTCTAAGTCTAACAAGGGAATGTGA 1686 0.4004 MASARSWLQRLQPRDKMRAGSKKKEEDSDSNNNGDSNAPVDEVTKQKVAAAKQYIENHYKEQMKNLQERKERRAVLENKLADADVSEEDQNNLFKFLEKKETEYMRLKRHKMGAGNFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVISERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKRNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCRSLEEKDFSMGQNVNGTRFTQNDEHAAPKRTQQEQLQHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWKSHLKFPVEARLSPEAKDLISKLLCNVSHRLGSKGADEIKAHPFFEGVDWNKLYQMEAAFIPEVKNELDTQNFEKFEESDNQTKTAARTGPWRKMHSSKDLNFVGYTYKNFEIVNDYQVPGTTELKKKPSKLKRPSIKSLFETPEVPEVSDTSSPSNKSAQGSFLKLLPPQLEVSKSGKSLPSKSNKGM 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0848 561 Pfam Protein kinase domain 118 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0848 561 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lal12g0848 561 SMART serkin_6 117 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0848 561 Coils Coil 59 79 - -
Lal12g0848 561 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal12g0848 561 MobiDBLite consensus disorder prediction 496 561 - -
Lal12g0848 561 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal12g0848 561 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 35 533 - -
Lal12g0848 561 Gene3D Phosphorylase Kinase; domain 1 116 446 - -
Lal12g0848 561 MobiDBLite consensus disorder prediction 1 46 - -
Lal12g0848 561 CDD STKc_NDR_like 116 481 - -
Lal12g0848 561 MobiDBLite consensus disorder prediction 518 536 - -
Lal12g0848 561 MobiDBLite consensus disorder prediction 11 31 - -
Lal12g0848 561 SUPERFAMILY Protein kinase-like (PK-like) 90 469 IPR011009 -
Lal12g0848 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Lal12g0848 561 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Lal12g0848 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 533 - -
Lal12g0848 561 Gene3D Transferase(Phosphotransferase) domain 1 201 435 - -
Lal12g0848 561 ProSiteProfiles Protein kinase domain profile. 117 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0848 Lal-Chr12 6942433 6953874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0848 1 517 AGC Kinase Gene Family AT2G20470 75.379 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lal12g0848 Pkinase 6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0848 K08790 - gmx:100820558 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0848 12 6942433 6953874 Lal12g0848 12 6942433 6953874 ECH
Lal12g0848 12 6942433 6953874 Lal13g1042 13 7688850 7700635 LSH
Lal12g0848 12 6942433 6953874 Lal1g1882 1 21114044 21119653 PCT