LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal12g0848	ATGGCTTCAGCAAGGAGTTGGCTTCAGAGGTTGCAGCCTCGGGATAAAATGAGGGCGGGTTCAAAGAAGAAGGAGGAGGATAGTGATAGTAATAATAACGGAGATTCAAATGCGCCCGTGGATGAAGTCACAAAGCAGAAGGTTGCAGCTGCAAAACAGTATATTGAAAACCATTACAAGGAGCAAATGAAGAATCTTCAAGAAAGGAAGGAACGTCGAGCAGTCTTGGAAAATAAGTTGGCTGATGCTGACGTCTCTGAAGAGGATCAAAACAACCTGTTTAAGTTTTTAGAGAAAAAGGAAACTGAGTATATGCGCCTTAAGAGACATAAGATGGGTGCAGGTAATTTTGAGTTGCTGACCATGATTGGCAAAGGTGCATTTGGGGAGGTCAGAGTCTGCAGGGAGAAGACTACAGGTCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTCATATCTGAAAGGAATCTCCTTGCGGAGGTTGACAGCAATTGCATCGTCAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTGTATCTTATTATGGAATATCTACCGGGTGGGGATATGATGACTCTTCTTATGAGAAAGGATACCTTGACTGAAGATGAAGCTAGGTTTTATGTAGGAGAAACAGTTCTGGCTATTGAGTCTATACATAAACGCAATTATATACACAGGGATATCAAGCCCGATAACTTATTACTTGATAGATATGGACACTTGAGACTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGATCACTTGAAGAAAAGGATTTTTCTATGGGTCAGAATGTAAACGGAACTAGATTTACACAGAATGATGAACATGCTGCTCCAAAACGCACACAACAAGAACAACTGCAACACTGGCAACAAAATAGGAGGACACTGGCTTATTCCACAGTTGGTACACCAGACTATATTGCTCCCGAAGTTCTGTTGAAGAAAGGCTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGAACCAATGACAACATGTAGGAAGATTGTAAACTGGAAATCTCACTTGAAATTTCCTGTAGAAGCAAGGCTATCCCCAGAGGCTAAAGATCTCATTAGTAAACTTTTGTGTAATGTCAGCCATAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAGGCTCATCCATTCTTTGAAGGTGTTGACTGGAATAAGCTATATCAAATGGAAGCTGCATTTATTCCTGAGGTCAAGAATGAGTTAGATACTCAGAATTTTGAAAAATTTGAAGAGTCTGACAACCAAACTAAAACAGCAGCAAGGACTGGTCCGTGGAGGAAGATGCATTCATCTAAGGATTTGAATTTTGTTGGATACACATACAAGAATTTTGAAATTGTCAACGATTATCAAGTTCCTGGGACAACTGAATTGAAGAAGAAACCCTCCAAACTAAAGAGGCCATCAATCAAATCACTTTTTGAAACACCGGAGGTACCCGAGGTTTCTGATACATCATCTCCAAGCAACAAATCTGCTCAAGGAAGCTTTTTAAAACTATTGCCACCTCAATTAGAGGTATCTAAAAGTGGCAAGAGTCTTCCTTCTAAGTCTAACAAGGGAATGTGA	1686	0.4004	MASARSWLQRLQPRDKMRAGSKKKEEDSDSNNNGDSNAPVDEVTKQKVAAAKQYIENHYKEQMKNLQERKERRAVLENKLADADVSEEDQNNLFKFLEKKETEYMRLKRHKMGAGNFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVISERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKRNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCRSLEEKDFSMGQNVNGTRFTQNDEHAAPKRTQQEQLQHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWKSHLKFPVEARLSPEAKDLISKLLCNVSHRLGSKGADEIKAHPFFEGVDWNKLYQMEAAFIPEVKNELDTQNFEKFEESDNQTKTAARTGPWRKMHSSKDLNFVGYTYKNFEIVNDYQVPGTTELKKKPSKLKRPSIKSLFETPEVPEVSDTSSPSNKSAQGSFLKLLPPQLEVSKSGKSLPSKSNKGM	561

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal12g0848	561	Pfam	Protein kinase domain	118	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal12g0848	561	Pfam	Protein kinase C terminal domain	436	480	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
Lal12g0848	561	SMART	serkin_6	117	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal12g0848	561	Coils	Coil	59	79	-	-
Lal12g0848	561	SMART	pkinase_C_6	418	482	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
Lal12g0848	561	MobiDBLite	consensus disorder prediction	496	561	-	-
Lal12g0848	561	ProSiteProfiles	AGC-kinase C-terminal domain profile.	418	490	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
Lal12g0848	561	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	35	533	-	-
Lal12g0848	561	Gene3D	Phosphorylase Kinase; domain 1	116	446	-	-
Lal12g0848	561	MobiDBLite	consensus disorder prediction	1	46	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal12g0848	Lal-Chr12	6942433	6953874	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal12g0848	1	517	AGC Kinase Gene Family	AT2G20470	75.379	0.0	822

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Lal12g0848		Pkinase	6e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal12g0848	K08790		-	gmx:100820558	918.302

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal12g0848	12	6942433	6953874	Lal12g0848	12	6942433	6953874	ECH
Lal12g0848	12	6942433	6953874	Lal13g1042	13	7688850	7700635	LSH
Lal12g0848	12	6942433	6953874	Lal1g1882	1	21114044	21119653	PCT

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