Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0843 ATGCATATAGGTCAGACAGATACAACTTCCGTGAAATGTCTAATCAACAGCGTTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAGTGAAACCTGTGCCTTTACATGAGATCTTCAGTAATATGGTTGGGGTGTTAAAGCGTTTGAAACCAGTGCTTGATGACTTAATGGATTACAAAATCCATTTATCCGAAAATCTGTCTAAAGAGTGTCAAGAATTAGATATGCGGGTTAACGAAGCCAGAGGTTTCATTGAAAAGTGGGATCCAAAGATGAGCAAGATTCACAGCGTTCTTCAAAGTGGGACATTGTTGATCAAGTTACAGTGTACTTCACTTGATATTTGTCACATGATAGTGAAGTCCTTACAATCACCTCCATCAGCTTCCGTTTTGGCTAATCTTCAGAACTATATTCAGGAAATTCAGTGTCTCAAGAAGGAAACAGCGTTAGTCTATATTGAAGATGCGCTGAGAAACCAAAGAGATAATGTTGAACCTTGCAACGAACATCTAAAGAAAATTATTGAGTTACTTAGATTGGCATCAAACCAGGAGCTCTTGAAAGAAAGTATTGCTTTGGAAAAGGAAAAATTGAATGCTGAAGTCAAAAAAATAAAGGGGAACCTGGAAGAGATTAACGAAATTATGAATCTTGTTCGCAATCTACGTGATTATGTGATGAAAAGTGAGTGCCCTGAAGTCAAAAGTGGTGTTTCAATCCCTCCATACTTCCGCTGTCCTTTATCGGTGGAACTCATGTTCGATCCTGTCATCGTGGCTTCAGGTCAAACATATGAGAGACAATCCATCCAAAAGTGGCTTGATCACGGGCTAACCGTTTGCCCCAAGACTCGTCAAAGACTGACTCATACAAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAAATTGGTGTGAGGAAAATGCGGTCAAATTTTCCAGTAACTCTGACCACATCCAGTCTTCCCGTGTCACTACCCCTTCAGATCATTCACTGCCTCAAGATTTAGCTCATGCATGTAGTTTACGGTCATTACCTAGTAGCAATTCCGTTTCAAGATCGTCTATTCAAGCAGGAAATGCGTTGGAGAAGCGAAAGGATGATAGCTCTTTCAGATTAACTGAAGGACACAATGGATGCCAGAGTGGAGCAACAGAAAAGTTTGAGCAGCAATCCCCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTTCAATTTCTAGTACAGAATGTTTACTTCCAGTTCCAAAAGAAGAGTCCCGGATATCCAATAAGCAACAAAACACAACGGTGTTCTCCGGAGAAATAAAAAACGTGTGTCCGACCTCTCCTGGTAACAAACAATCAGGGATTTCTCCTGTTTCAAGAATTGGAGGAATGGATAATAATAGTTGTCATACTAATAATAGTCATTCAAGAATTGATTCGCATCCTGTTTCCAACCCCGGATTGGATGAATTGACCACTGCTTCTCATGTCAATGAATTGATTGAAGACCTTCACAGCCAATCAAATGAAGTGCAAACTATTGCTGCAGAAGAGTTGAGGCTCCTTACAAAGCATAACATGGAAAACCGTATCATTGTAGGGCATTGCGGAACTGTTGTGCCTTTGCTTTCATTGCTGTATTCAGATGTGAAGATAACACAAGAGCATGCTGTGACAGCTCTTCTGAATTTGTCGATTAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCGATAGAACCACTTATATATGTTTTGAAGACAGGAAACAATGGTGCTAAGGAAAACTCTGCAGCAGCTTTATTCAGCCTTTCTGTAATAGAAAACAATAAGGAAAAAATTGGCCGATCTGGTGCAGTTAAAACTTTGGTGGATCTTCTTGAATCAGGAACACTAAGAGGAAAGAAGGATGCTGCTACTGCTTTATATAACCTGTCAATATTTCACGAAAATAAAGCTCGTATAGTTCAAGCTGGAGCCGTGAAATTTCTGGTTCAGATAATGGACCGTGCTGATGGAATGGTCGACAAGGCTGTCGCCCTTCTGTCAAACCTGTCAACAATTTCAGAGGGCCGGTTAGAAATTGCAAAGGAAGGGGGCATCCCCTTACTAGTTGAAATCCTTGAATCGGGGTCACACAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCTAAGTTTTGTACTCTAGTTTTACAAGAAGGAGCTGTACCTCCTCTGGTTGCATTGTCTCAATCTGGTACGCCGAGAGCAAAGGAAAAGGCACAACAACTCCTCAGTCATTTTCGGAATCAGCGCGAAGGAGCAACTGCGAAAGGAAAACCATGA 2346 0.4088 MHIGQTDTTSVKCLINSVSRFIHLVSCQTVKPVPLHEIFSNMVGVLKRLKPVLDDLMDYKIHLSENLSKECQELDMRVNEARGFIEKWDPKMSKIHSVLQSGTLLIKLQCTSLDICHMIVKSLQSPPSASVLANLQNYIQEIQCLKKETALVYIEDALRNQRDNVEPCNEHLKKIIELLRLASNQELLKESIALEKEKLNAEVKKIKGNLEEINEIMNLVRNLRDYVMKSECPEVKSGVSIPPYFRCPLSVELMFDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIANWCEENAVKFSSNSDHIQSSRVTTPSDHSLPQDLAHACSLRSLPSSNSVSRSSIQAGNALEKRKDDSSFRLTEGHNGCQSGATEKFEQQSPYIHSRSESFSSSISSTECLLPVPKEESRISNKQQNTTVFSGEIKNVCPTSPGNKQSGISPVSRIGGMDNNSCHTNNSHSRIDSHPVSNPGLDELTTASHVNELIEDLHSQSNEVQTIAAEELRLLTKHNMENRIIVGHCGTVVPLLSLLYSDVKITQEHAVTALLNLSINEDNKALIMEAGAIEPLIYVLKTGNNGAKENSAAALFSLSVIENNKEKIGRSGAVKTLVDLLESGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVQIMDRADGMVDKAVALLSNLSTISEGRLEIAKEGGIPLLVEILESGSHRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATAKGKP 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0843 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Lal12g0843 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Lal12g0843 781 Gene3D - 633 778 IPR011989 -
Lal12g0843 781 PANTHER U BOX DOMAIN-CONTAINING 11 776 - -
Lal12g0843 781 Pfam Armadillo/beta-catenin-like repeat 527 564 IPR000225 GO:0005515
Lal12g0843 781 Pfam Armadillo/beta-catenin-like repeat 610 646 IPR000225 GO:0005515
Lal12g0843 781 Pfam Armadillo/beta-catenin-like repeat 566 605 IPR000225 GO:0005515
Lal12g0843 781 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Lal12g0843 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 577 619 IPR000225 GO:0005515
Lal12g0843 781 MobiDBLite consensus disorder prediction 348 362 - -
Lal12g0843 781 MobiDBLite consensus disorder prediction 439 489 - -
Lal12g0843 781 MobiDBLite consensus disorder prediction 348 404 - -
Lal12g0843 781 Gene3D - 486 632 IPR011989 -
Lal12g0843 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 659 700 IPR000225 GO:0005515
Lal12g0843 781 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Lal12g0843 781 Coils Coil 128 148 - -
Lal12g0843 781 Coils Coil 184 216 - -
Lal12g0843 781 Coils Coil 758 778 - -
Lal12g0843 781 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Lal12g0843 781 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 776 - -
Lal12g0843 781 SUPERFAMILY ARM repeat 485 768 IPR016024 -
Lal12g0843 781 MobiDBLite consensus disorder prediction 377 404 - -
Lal12g0843 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 618 660 IPR000225 GO:0005515
Lal12g0843 781 SUPERFAMILY RING/U-box 239 314 - -
Lal12g0843 781 CDD RING-Ubox_PUB 245 287 IPR045210 -
Lal12g0843 781 SMART arm_5 688 728 IPR000225 GO:0005515
Lal12g0843 781 SMART arm_5 566 606 IPR000225 GO:0005515
Lal12g0843 781 SMART arm_5 648 687 IPR000225 GO:0005515
Lal12g0843 781 SMART arm_5 525 565 IPR000225 GO:0005515
Lal12g0843 781 SMART arm_5 607 647 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0843 Lal-Chr12 6869440 6874568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0843 7 780 U-box Gene Family AT3G54790 51.786 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0843 - - gmx:100800949 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0843 12 6869440 6874568 Lal12g0843 12 6869440 6874568 ECH