Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0839 ATGCCGGCGCTACTCTCGCCGGGGAAAATCCTCCGTCTAGAGATGGAGAATTTCAAGTCCTACAAAGGCTTCCAAGTGATTGGTCCCTTCCATGATTTCACCGCCGTAATTGGCCCAAACGGTTCCGGTAAATCGAACCTTATGGACGCGATCAGTTTCGTTCTCGGCGTCAGGACCGGCCAGCTCCGTGGCGCACAACTTAAGGACCTAATCTACGCTTTCGATGATCGCGAAAAGGAGCAGAAGGGACGCAGGGCTTTCGTTAGACTTGTCTACCAGCTTGCCAATGGCACCGAGATCCAGTTCACTAGGGCGATCACTAGCGCCGGTGCCAGCGAGTATCGCATCGATGGGAATGTGGTTACTTGGGATGTTTACAATGCAAAGCTCAAGTCCCTTGGGATTCTTGTGAAGGCTCGAAATTTCTTGGTTTTTCAGGGTGATGTGGAATCGATTGCATCCAAAAATCCGAAAGAGCTCACTGGCCTTATTGAGCAGATATCTGGTTCGGATGAGCTTAAGAGAGACTATGAGCAATTTGAAGAAGAAAAAGCTTCGGCCGAAGAAAAATCCGCGCTTGCTTATCAGAAGAAGAAGACAATAGTTCTGGAGAGAAAGCAGAAGAAAGAACAAAAGGAAGAAGCAGAGAAGCATCTCCGCTTACAAGATCAACTGAAATCTAGAAAGAAAGAGCATTTCTTCTGGCAGTTGTTCAATATAGAAAATGATATTGTTAAAACTACTGAAGAACTTGAAGACGAGAAAAGAAGTCGTGAAGGTGTTATTGAAGAATTAGAAAAGTTCGAAAATGAAGCTGGTAAAAAGAAAAAAGAGCAGGCCAAATATCTAAAAGAGATTGCACTACGCGAAAAGAGAATTACTGAGAAAAACAACAAGCTTGAGAAGACTCAACCTGCACTTCTGAAGTTAAAGGAAGAAATGACTCGTATCAATTCAAAAATTAAAAAAGGGAGTAAGGAACTTGATAAAAAAAGAGATGAACGGAGGAAGCACATTACTGATATAAAGGAGCTACAGAGGGGCATAAAAGATCTGACAGCAAAAATGGCAGATCTCCAGGAAAAGGGCCGAGATGTTGGCGATGAGCTAAATTTGGATGGCAGTGACTTGGAAGAGTATTTCCGAATCAAAGAGGATGCTGGGATGAAAACTGCAAAGCTCAGAGAGGAGAAAGAGGTTCTAGATACCAAGCAACATGCTGACAGTGAAGCTCAAAAAAATTTGGAAGAAAATCTTCAACAGTTAATAAACAGGGAATCTGAACTGAAATCACAGGAGGAACAGATGCTGACAAGGCTGAAAAGACTTCTTGATAGTTCTTCAAAGAATAGGGATGACCTTGCAAACTTGGACAAAGAACGGCTTTTGATGAAGCACAAACATCAGGATTCCATGAATAAATATGAAAATTTGAAGTTAAAAATTGGTGAAATAGAAAATCAACTACGTGAATTGAAGGCTGATAGGTATGAAAATGAGAGAGATGCTAGGCTGTCTCAGGCTGTGGAGACACTGAAGCGTCTCTTTCAAGGAGTCCAGGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACAGTTGCTATGGGTAAATTTATGGATGCAGTCGTAGTTGAGGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTGAAAGATCAAAGGCTCCCTCCTCAGACATTTATTCCTCTGCAATCAATTCGTGTGAAGCCAATAATGGAAAGGTTGCGCACATTAGGGGGTACAGCTAAGCTAGTTTTTGATGTGATTCAATATCCTTTTTCACTATTTGCTACGTTGAGGAATCTGGTTGGAGAAGTCTTCACAGAGCTTCAAAATTTTGTCATTTGA 1890 0.4201 MPALLSPGKILRLEMENFKSYKGFQVIGPFHDFTAVIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYQLANGTEIQFTRAITSAGASEYRIDGNVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKASAEEKSALAYQKKKTIVLERKQKKEQKEEAEKHLRLQDQLKSRKKEHFFWQLFNIENDIVKTTEELEDEKRSREGVIEELEKFENEAGKKKKEQAKYLKEIALREKRITEKNNKLEKTQPALLKLKEEMTRINSKIKKGSKELDKKRDERRKHITDIKELQRGIKDLTAKMADLQEKGRDVGDELNLDGSDLEEYFRIKEDAGMKTAKLREEKEVLDTKQHADSEAQKNLEENLQQLINRESELKSQEEQMLTRLKRLLDSSSKNRDDLANLDKERLLMKHKHQDSMNKYENLKLKIGEIENQLRELKADRYENERDARLSQAVETLKRLFQGVQGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLVFDVIQYPFSLFATLRNLVGEVFTELQNFVI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0839 629 Gene3D - 479 596 - -
Lal12g0839 629 Coils Coil 342 369 - -
Lal12g0839 629 Coils Coil 412 435 - -
Lal12g0839 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 271 IPR027417 -
Lal12g0839 629 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lal12g0839 629 Coils Coil 307 327 - -
Lal12g0839 629 SUPERFAMILY Smc hinge domain 481 620 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lal12g0839 629 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 610 - -
Lal12g0839 629 Coils Coil 237 303 - -
Lal12g0839 629 Coils Coil 468 502 - -
Lal12g0839 629 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 610 - -
Lal12g0839 629 Pfam RecF/RecN/SMC N terminal domain 10 348 IPR003395 -
Lal12g0839 629 Gene3D - 8 217 IPR027417 -
Lal12g0839 629 Pfam SMC proteins Flexible Hinge Domain 517 620 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lal12g0839 629 Coils Coil 170 228 - -
Lal12g0839 629 SMART SMC_hinge_2 517 617 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0839 Lal-Chr12 6816243 6835488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0839 8 112 Structural Maintenance of Chromosomes family AT5G61460 34.821 3.35e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0839 12 6816243 6835488 Lal12g0839 12 6816243 6835488 ECH