Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0827 ATGTGTAGTTGGATCAGTTCAAAGCACTTTAGGATGATTCTATGGTTACCCATTTTGGTTTTTAGCTTATTCATTGGAATAATACAATGCCAAGAAATGAATGACTATGACCAAATTGATAACCCTTCTGTGCTTCCCCTTATTACTCAGCTTGTCTATACCAGACTTTCTAATCTTACCTCAGTTCTTAGTCAAGAAATCAGTTCACAGTCCACTTTCTGTGTCAAAGATCCGGATGCTGATTGGAATCAAGCATTTAATTTTTCATCCGATTTAGGCTTCTTGGCTTCTTGTATTAAGACGACTAGAGGAGATATTACAAAACGCTTGTGTACAGCAGCAGAAGTGAAGTTTTACTTAAATAGTTTATTGGATAGATCTACAAGTGCCAGTTATTTAAAGCCTAACAAGAATTGCAATTTAACATCATGGGTCCCTGGTTGCGAGCCAGGATGGGCCTGTAGTGTTCCCTCAAGCCAGAAGGTTGACCTTAGAAATTCGAAGGAGATACCTGCAAGAACTTCAAACTGTCAAGCATGTTGTGAAGGGTTCTTTTGTCCTCATGGTATCACATGCATGATACCTTGCCCTCTAGGTTCTTATTGCCCTCTTGCTACACTCAATAAAACAACGGGCATATGTGAACCATATCTTTATCAACTGCCTCCGATGCAGCCAAACCATACATGTGGTGGAGCAAATGTATGGGCTGATGTTAGTAGCAGTGGCGAGATATTTTGCTCAGCCGGATCTTATTGTCCAACATCTACCAAAAGAATTCCATGCAGTAGTGGGCATTACTGCAGGACAGGTTCCACATCTGAGAAAAGATGCTTCAAGTTGAGTTCATGTAATTCAAACACGGCGACCCAGAATATGCATGCATATGGAGTTATGCTCATTGCAGCTTTGAGTACTTTGCTACTTATTATTTACAACTGTTCTGACCAAGTCCTCACTACAAGGGAAAGGAGAGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAAGAAGACTGCAAATGCACACCAGAGATGGAAAGTTGCAAAGGATGCTGCTATGAAGGGTGCAACTGGGCTGCAAGCTCAACTGTCACGCAAATTCTCGCGTAAGAAGGATGCAGAAGATCTGGAAAAAGTTAAGATTTTGAATCAATTAACTTCTGAAACTGATGTTGAATTGATGCCACACTCACATCCTGTTACCATTTCAAGCATGGCTGCAAGTTCATCTGCAATGCCAAAGGAAAAGGAAAAAGAACCTAGTGGTCTGATGCAGATTATACATGAAATTGAAAATGACCCGGAAATTGATGACAACTTTACTGTAGAAACAGAAACTAGAGGTAAAAAGGTTACAGGAAATGTGACAAAGGCAAAACAAATGCATACTCATAGCCAAATATTTAAGTATGCATATGCTCAGCTTGAAAAAGAGAAGACTGAGCAACAAGAAAACAAGAACCTTACCTTCTCAGGAGTAATTGAAATGGCTACCAACACAGAGAGAAGAAAAAGGCCTTTAATTGAGATTTCTTTCAGGGATATCACTCTTACATTGAAAGCTCAAAACAAACACATATTGAGATGTGTTACCGGAAAGATTAAACCTGGCCGCATCACAGCTGTCATGGGTCCGTCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGCGTGGTTACTGGTTCAATTCTTATAAATAACAGGAATGAATCAATCCATTCCTTTAAGAAAATTATTGGCTTTGTGCCACAAGATGATATAGTTCATGGAAACCTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCAGCTGACTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAGAGAGTTATTGAATTCTTGGGGCTTCAGTCTGTGAGGAATTCTTTGGTTGGAACCGTGGAAAAGCGAGGGGTCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATCTTGGATGAACCTACGTCTGGTTTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTAAGACGTGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCAAGTTATGCTTTGTTCCAGATGTTTGATGACTTGATACTTCTGGGAAAAGGTGGGCTCACAGTGTATCATGGATCTTCGAAGAAAGTTGAAGAATACTTTGCAGGCCTGGGGATCAATATCCCGGAGCGGATTAATCCTCCCGATTACTTCATTGACATTCTGGAGGGCATAATAGTACCTGGTGGAAGCTCAGGGCTCAATTATAAAGTGCTGCCAGTTAGATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGCATGCCGAACAATTTGATACATCAGTAAGTGTAAATTCGGCTAATGAAACAGATTCCAATAGCCTTGGTCATGAGGAGAAAACCTTTGCTGGAGAATTATGGCAAGATGTGAGAAACAATGTGGAAGTGCAGAGGGAGAAGATACGACTCAATTTTTTGACATCCAAGGATGTATCTAATCGTAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTCTTATACGGGTTGGGAAGCAGCGATTACGAGAAGCTAGGATCCAAGCCATAGATTATCTGATCTTGTTACTTGCTGGAGCCTGCTTAGGATCACTTACCAAATCAAGTGATCAAACATTTGGTGCATCTGGGTACACCTATACAGTGATTGGTGTATCTCTTCTGTGCAAAATAGCAGCCTTGAGATCATTTTCTTTGGATAAATTACACTATTGGAGGGAGAGTGATTCTGGAATGAGCAGCTTGGCTTATTTTCTTTCTAAAGACACAATTGACCATTTTAATACATTGATCAAGCCTATGGTGTACCTATCTATGTTCTATTTCTTCACCAATCCGAGATCTACTTTTGCCGATAATTACGTTGTGCTTCTCTGTCTTGTATACTGTGTGACTGGCATAGCATATGCACTGTCCATATTTTTGGAACCTGGCGCGGCCCAGCTGTGGTCAGTACTTCTTCCAGTTGTTTTGACTCTCATTGCAACACAACCAATAGATAATAAAATTTTGAAGGGTATAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCATTTGTAGTTTCAAACGCCGAAAGGTACCAGGGAGTGTGGCTTATAACTCGTTGTGGTTCACTAATGAAAAGTGGCTATAATCTTCATAATTGGAGTTTATGCATATACATTCTCATTCTTATGGGAATAATTTCCAGGTTCATAGCATTTTTCTGTATGGTCACTTTCAAAAAGAAATAA 3360 0.4054 MCSWISSKHFRMILWLPILVFSLFIGIIQCQEMNDYDQIDNPSVLPLITQLVYTRLSNLTSVLSQEISSQSTFCVKDPDADWNQAFNFSSDLGFLASCIKTTRGDITKRLCTAAEVKFYLNSLLDRSTSASYLKPNKNCNLTSWVPGCEPGWACSVPSSQKVDLRNSKEIPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPPMQPNHTCGGANVWADVSSSGEIFCSAGSYCPTSTKRIPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGVMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSAKKTANAHQRWKVAKDAAMKGATGLQAQLSRKFSRKKDAEDLEKVKILNQLTSETDVELMPHSHPVTISSMAASSSAMPKEKEKEPSGLMQIIHEIENDPEIDDNFTVETETRGKKVTGNVTKAKQMHTHSQIFKYAYAQLEKEKTEQQENKNLTFSGVIEMATNTERRKRPLIEISFRDITLTLKAQNKHILRCVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCVVTGSILINNRNESIHSFKKIIGFVPQDDIVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGVSGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFQMFDDLILLGKGGLTVYHGSSKKVEEYFAGLGINIPERINPPDYFIDILEGIIVPGGSSGLNYKVLPVRWMLHNGYPIPLDMRQHAEQFDTSVSVNSANETDSNSLGHEEKTFAGELWQDVRNNVEVQREKIRLNFLTSKDVSNRKTPGVFKQYKYFLIRVGKQRLREARIQAIDYLILLLAGACLGSLTKSSDQTFGASGYTYTVIGVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTLIKPMVYLSMFYFFTNPRSTFADNYVVLLCLVYCVTGIAYALSIFLEPGAAQLWSVLLPVVLTLIATQPIDNKILKGIANLCYSKWALQAFVVSNAERYQGVWLITRCGSLMKSGYNLHNWSLCIYILILMGIISRFIAFFCMVTFKKK 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0827 1119 Pfam ABC-2 type transporter 710 1119 IPR043926 GO:0140359
Lal12g0827 1119 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 1116 - -
Lal12g0827 1119 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 37 1116 - -
Lal12g0827 1119 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 512 754 IPR003439 GO:0005524
Lal12g0827 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 743 IPR027417 -
Lal12g0827 1119 Pfam ABC transporter 531 681 IPR003439 GO:0005524
Lal12g0827 1119 SMART AAA_5 538 730 IPR003593 -
Lal12g0827 1119 CDD ABCG_EPDR 510 736 - -
Lal12g0827 1119 ProSitePatterns ABC transporters family signature. 653 667 IPR017871 GO:0005524
Lal12g0827 1119 Gene3D - 510 746 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0827 Lal-Chr12 6656068 6664978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0827 536 731 Calmodulin-binding Proteins AT2G36910 25.581 2.68e-10 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0827 12 6656068 6664978 Lal13g1009 13 7408439 7416085 ECH
Lal20g0100 20 645933 650082 Lal12g0827 12 6656068 6664978 ECH
Lal12g0827 12 6656068 6664978 Lal12g0827 12 6656068 6664978 ECH
Lal12g0827 12 6656068 6664978 Lal13g1009 13 7408439 7416085 LSH