Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0824 ATGGATGGTGGAGAGAACCGAAAGGCACTGGTTGTGGCTCGTTTGATTGATACCATAAAGGAGATTTCTGTGTTGCCAGAGTGTCACAACGTGTGTAAAAGGATGTATGGGAATTTGGTTAGAAGGGTTAAGCTTTTGAGCCCTCTTTTTGAAGAATTAAGGGACAGTGATGAATCACTATGTGATGAACAGCTTCAAGCCTTTGAGTCTCTCAGGGTTGCTTTGGATTCTGCTAAGATCCTTCTTCAGTCTGTGAATCATGGAAGTAAGCTTTATCAGGCCTTGCGAAGGAATGATACAGTTGATAAGTTCCAACAAATTACTCAAAAAATTGAAGAAGCCTTGAGTGAAATTTCTTACGACAAATTTGAGATATCGGAGGAAGTTCAAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAGCTCGAACGGAGATTGCTGATTTACAACTAGACTTGGATATTGCAGTAATGCAAAATGAAAAGGACCCTGATCCTAGTATACTCAAAAGACTTACTGAGGAGTTGCACCTTAGGACTATGAATGACCTAAAGAAAGAGTCTATTGAAATACGTGAACTGATTATCACATGCAATGGAGAACCCGAGGACTTAGTTAATGCCATGACATCCCTTCTTAGGAAACTAAAGGACTGTGTGGTCACAGAAAATCCTGAGGTTGACACCTCTGAGGGTAGTAAGGTGTCAATTAAGCACAGGTCTCCTGTAATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCTACCGGTCAGACATATGAAAGATCCTGCATTCAGAAATGGCTTGATGCTGGTCACAGAACATGCCCTAAGACACAGCAGACACTCTTGCATACAGCCCTTACTCCTAACTATGTTTTGAAGAGTCTGATTGCTTTATGGTGTGAAAGCAATGGTATTGAGCTACCAAAGAAGCAAGGCAGCTGTAGAACAAAGAAATCTGGAAGCAGTCTTTCAGACTGTGATCGGACCGCGATTAGTGTCTTATTGGAGAAACTAGCATATGGTGATACTGAACAACAAAGGGCAGCTGCTGGTGAGCTCCGGTTACTGGCTAAGAGGAACGCAGATAACCGAGTATGTATTGCTGAGGCAGGAGCTATACCGCTACTTGTAGAGTTGTTGTCTTCCTCAGATCCTCGAACTCAGGAGCATGCTGTTACCGCACTTCTTAATCTTTCGATCAATGAGAGTAACAAAGGAACTATAGTAAATGCAGGGGCTATACCAGATATTGTAGATGTACTGAAAAGTGGCAGCATGGAGGCTAGAGAAAATGCGGCCGCGACTCTCTTTAGTTTATCTGTTCTAGATGAAAACAAGGTTGCCATAGGAGCAGCTGGAGCTATCCCTGCTCTTATAGAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATCTTTAATCTTTCTATCTATCAGGGAAACAAATCGAGAGCCGTAAAAGCTGGTATAGTGGCCCCACTAATGGGATTTCTGATGGATGCTGGAGGTGGGATGGTAGATGAGGCACTAGCTATATTGGCAATCCTTGCAAGTCATCGTGAAGGTAGGATAGCAATTGGTCAGGCTGAGCCTATTCCAGTTCTAATTGAGGTTATACGAACCGGATCACCACGCAACCGGGAGAACGCTGCTGCTGTCTTGTGGTCACTATGCACTGGAGATTTACTGCAGTTGAAACTAGCAAAGGGACTTGGTGCAGAAGAAGCACTGCAGGAATTATCAGAAAATGGCACTGATAGAGCCAAGAGAAAAGCTGGAAGTATATTAGAACTCTTACAGAGAATGGTGGAAGTGGATGATAAATTGCAAAATTCTTAG 1896 0.4283 MDGGENRKALVVARLIDTIKEISVLPECHNVCKRMYGNLVRRVKLLSPLFEELRDSDESLCDEQLQAFESLRVALDSAKILLQSVNHGSKLYQALRRNDTVDKFQQITQKIEEALSEISYDKFEISEEVQEQIELVHAQFKRAKARTEIADLQLDLDIAVMQNEKDPDPSILKRLTEELHLRTMNDLKKESIEIRELIITCNGEPEDLVNAMTSLLRKLKDCVVTENPEVDTSEGSKVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKSGSSLSDCDRTAISVLLEKLAYGDTEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIELLCEGTPRGKKDAATAIFNLSIYQGNKSRAVKAGIVAPLMGFLMDAGGGMVDEALAILAILASHREGRIAIGQAEPIPVLIEVIRTGSPRNRENAAAVLWSLCTGDLLQLKLAKGLGAEEALQELSENGTDRAKRKAGSILELLQRMVEVDDKLQNS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0824 631 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 11 622 - -
Lal12g0824 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Lal12g0824 631 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Lal12g0824 631 SUPERFAMILY RING/U-box 246 322 - -
Lal12g0824 631 Coils Coil 126 146 - -
Lal12g0824 631 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Lal12g0824 631 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Lal12g0824 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Lal12g0824 631 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Lal12g0824 631 Gene3D - 10 121 IPR036537 GO:0007166
Lal12g0824 631 SMART arm_5 538 578 IPR000225 GO:0005515
Lal12g0824 631 SMART arm_5 374 414 IPR000225 GO:0005515
Lal12g0824 631 SMART arm_5 497 537 IPR000225 GO:0005515
Lal12g0824 631 SMART arm_5 415 455 IPR000225 GO:0005515
Lal12g0824 631 SMART arm_5 456 496 IPR000225 GO:0005515
Lal12g0824 631 Gene3D - 335 417 IPR011989 -
Lal12g0824 631 CDD RING-Ubox_PUB 251 293 IPR045210 -
Lal12g0824 631 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Lal12g0824 631 SUPERFAMILY ARM repeat 342 618 IPR016024 -
Lal12g0824 631 Gene3D - 521 630 IPR011989 -
Lal12g0824 631 PANTHER U BOX DOMAIN-CONTAINING 11 622 - -
Lal12g0824 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Lal12g0824 631 Gene3D - 418 520 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0824 Lal-Chr12 6621105 6624759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0824 11 620 U-box Gene Family AT3G54850 68.576 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0824 - - gmx:100777452 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0824 12 6621105 6624759 Lal12g0824 12 6621105 6624759 ECH