Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0819 ATGATGCCTCCTGAGCAAGAAACCACTATTGCACCAAACAATCAAGCAATTATGAACCGATCTGAGTTGGTTCACAATGAAGCAAATGGTTCTAACACTAGCAAAGTTAAACCCAGTTTGGATATTAATGTCATTACTGAACAACAGCATCAGCATCAGCATCAACCAACAGCAACACCAGCAAGATTTTCCATTCTTCACCAGTCTTTTCGTCCTGTTACCCTTAAATTTGAAGATGTTTCTTACAGCATAACCTTAAAAAGCCAGAAGAACAAAGGTTGTATATCATGTCAAGAGCCAAAGCCAACAAAGAAAGTACTATCTGGTGTAACCGGCATAGCCTGTCCCGGCGAGTTAACGGCAATGTTGGGTCCCTCAGGTAGCGGCAAGACCACCCTACTCACCGCCTTAGCCGGCCGTCTCACCGGAAAACTGACCGGCACAATCAAATACAATGGCAACCCTAACTCCAATTCCTTGAAGCGCAAGATAGGGTTTGTGTCACAAGAAGATGTTCTATACCCTCACCTCACAGTCCTTGAAACCCTCACCTATGCTGCTTTGTTGAGGCTACCAAAGACTCTCACTAGGGAAGAGAAGATGCAACATGTGGACATGGTCATCACGGAGCTTGGCCTCGCGCGCTGCCGCAACAGCCCTGTTGGCGGCGGCATGGCTTTGTTTCGAGGAATTTCAGGCGGGGAGAGGAAGCGGGTTAGTATAGGGTTGGAGATGTTGGTGAACCCTAGTTTGTTGTTCCTGGATGAACCAACGTCCGGTTTGGACTCCACGACGGCGCAACGAATTGTTTCGGTTCTCTGGGAACTAGCACGTGGCGGCCGGACGGTGGTGACCACCATTCACCAGCCTTCAAGCCGGTTGTATAGAATGTTTGATAAGGTGGTGGTTTTGTCTGATGGGTACCCAATATATAGTGGACAGGGTTGTAAGGTCATGGAGTATCTTGAATCCATTGGGTATGTGCCAGCTTTCAACTTCATGAACCCTGCAGATTTTTTGCTTGATCTTGCTAATGGCATAGTTGCTGATGCCAAACATCATGATCAGATAGATCACAATGAGGATCAAGCTTCAATCAAACAGTCCCTAATCTCATCCTATAACAAAAACTTATATCATGTTCTCAAAGAAGAGATTCAGAGAAATAGCAATGACTCAGTGGCTTTTACATCAGGAGGAACACCAAGGAGTTCTAATAACCAATGGGCCACTAGCTGGTGTGAGCAATTCAAGGTGCTTCTTAAGAGGGGTTTACAAGAGAGAAAGCATGAATCTTTTTCTGGCTTAAAGATTTTTCAAGTCCTGTCTGTGTCTATTCTCTCAGGACTTCTTTGGTGGCATTCTGATCCCTCCCATATACAAGATCAGGTTGGACTCTTATTCTTCTTCTCCATATTCTGGGGATTCTTCCCTCTTTTCAATGCCATCTTTGTATTCCCCTTGGAGAGGCCAATGCTGAGAAAAGAAAAATCATCAGGAATGTACCATCTTTCCTCCTACTATGTTGCGCGAACCGTTGGTGACTTACCAATGGAGCTTGTTCTTCCAACTATCTTTGTAACAATTACATACTGGATGGGTGGTCTAAAACCATCACTTGTAACATTTGTGTTAACCCTTTTGATCATGCTTTTAAATGTTCTAGTTTCTCAAGGAATTGGCCTCGCACTCGGCGCGATTCTTATGGATGTGAAGCAGGCCACAACTCTAGCCTCAGTCACCATGCTAGTGTTTCTATTAGCTGGTGGTTACTACATTCACCATATGCCATCTTTTATAGCATGGTTGAAGTACATTTCTTTTAGTCATTACTGCTATAAGTTGATGGTAGGAGTTCAGTATTCAGTAAATGAGTTTTATGAGTGTGGACCAAGGTTGCATTGTAGGGTAAGAGATTTCCCTTCCATAAAGTGTTTAGACCTTAATAATATGGGGGGAGATGTTGCAGCATTGATTGTTATGTTGGTTGGGTACAGAATTGTAGCATATCTAGCCTTGAGGATTGGGAAACTTCACTGA 2040 0.4392 MMPPEQETTIAPNNQAIMNRSELVHNEANGSNTSKVKPSLDINVITEQQHQHQHQPTATPARFSILHQSFRPVTLKFEDVSYSITLKSQKNKGCISCQEPKPTKKVLSGVTGIACPGELTAMLGPSGSGKTTLLTALAGRLTGKLTGTIKYNGNPNSNSLKRKIGFVSQEDVLYPHLTVLETLTYAALLRLPKTLTREEKMQHVDMVITELGLARCRNSPVGGGMALFRGISGGERKRVSIGLEMLVNPSLLFLDEPTSGLDSTTAQRIVSVLWELARGGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGQGCKVMEYLESIGYVPAFNFMNPADFLLDLANGIVADAKHHDQIDHNEDQASIKQSLISSYNKNLYHVLKEEIQRNSNDSVAFTSGGTPRSSNNQWATSWCEQFKVLLKRGLQERKHESFSGLKIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFVFPLERPMLRKEKSSGMYHLSSYYVARTVGDLPMELVLPTIFVTITYWMGGLKPSLVTFVLTLLIMLLNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIHHMPSFIAWLKYISFSHYCYKLMVGVQYSVNEFYECGPRLHCRVRDFPSIKCLDLNNMGGDVAALIVMLVGYRIVAYLALRIGKLH 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0819 679 Gene3D - 89 326 IPR027417 -
Lal12g0819 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 40 676 - -
Lal12g0819 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 40 676 - -
Lal12g0819 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 323 IPR027417 -
Lal12g0819 679 CDD ABCG_EPDR 72 313 - -
Lal12g0819 679 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524
Lal12g0819 679 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 331 IPR003439 GO:0005524
Lal12g0819 679 Pfam ABC-2 type transporter 288 353 IPR043926 GO:0140359
Lal12g0819 679 Pfam ABC-2 type transporter 415 621 IPR013525 GO:0016020|GO:0140359
Lal12g0819 679 SMART AAA_5 116 309 IPR003593 -
Lal12g0819 679 Pfam ABC transporter 115 259 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0819 Lal-Chr12 6528421 6534236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0819 101 307 Calmodulin-binding Proteins AT2G36910 30.233 1.34e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0819 K05681 - gmx:100783696 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0819 12 6528421 6534236 Lal13g0973 13 7040730 7045389 LSH