Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0816 ATGAAACAGGAAGATCAAGGGCAGTGTTCTTCTCAGTCTATCAGTAACTTCCATACCTACGAAGATCATTTACTCTTTCAGCATCAAATGATGCAGCAACAAAACTTTCAGCCATGGTCTATGCCACAGGTTCAACCTGACCCTTTTTTTGTCCCTCCTCAAAGTTCTTCTTCACCCTATGCAAACTTTTTCAACAGAAGTAGGGTTCCTTCTCTTCAGTTTTCATATGAGGGTTGTCCATCTTCTGAACAACTTAGAATCTTGTCAGAAACCCTTAATGTTCAACATGGTTCAGAAGCACCTTTTGGGCTACAAGCTGAGCTGGGAAAGATGAGTGTTGAACAAATCATGGAAGCTAAGGCTCTTGCACAATCTAAGAGTCACAGTGAAGCTGAAAGGAGGCGCAGAGAGAGAATCAATAATCATCTTGCAAAGCTGAGAAGTTTGTTGCCAAGCACAACAAAAACAGATAAAGCATCATTGTTAGCAGAAGTGATTCAACATGTGAAAGAACTGAAGCAACAAACATCATTGATAGCAGAAACTAGTCCAGTTCCTACTGAATCCGATGAGTTAACAGTGGACACAGAAGATGGTGAAGATGGCAAGTTTGTGATCAAAGCTTCACTTTGTTGTGAGGACAGAACAAACCTTTTACCTGAACTCATTAAGGCTTTGAAAGCATTAAGGTTAAGAACCTTCAAATCTGAGATCACAATGCTAGGTGGGCGTGTGAAGAATGTGTTGTTCATCACTGGGGATGAGGATTATTCAAGTAACAATGAAGAGCATAGTTATAATAATCAGCAACATTATTGCATTACTTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAAAGTGTTGAAGATAATGAGTCTGCTTCTGCAAGTGTCAAGAGACAAAGGACTAATATAATATCAATAGTGTAG 933 0.3944 MKQEDQGQCSSQSISNFHTYEDHLLFQHQMMQQQNFQPWSMPQVQPDPFFVPPQSSSSPYANFFNRSRVPSLQFSYEGCPSSEQLRILSETLNVQHGSEAPFGLQAELGKMSVEQIMEAKALAQSKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKQQTSLIAETSPVPTESDELTVDTEDGEDGKFVIKASLCCEDRTNLLPELIKALKALRLRTFKSEITMLGGRVKNVLFITGDEDYSSNNEEHSYNNQQHYCITSIQEALKAVMEKSVEDNESASASVKRQRTNIISIV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0816 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Lal12g0816 310 CDD bHLH_AtAIG1_like 118 197 - -
Lal12g0816 310 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Lal12g0816 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 179 IPR036638 GO:0046983
Lal12g0816 310 PANTHER TRANSCRIPTION FACTOR BHLH30 38 309 - -
Lal12g0816 310 SMART finulus 129 178 IPR011598 GO:0046983
Lal12g0816 310 CDD ACT_UUR-ACR-like 209 285 - -
Lal12g0816 310 PANTHER TRANSCRIPTION FACTOR BHLH30 38 309 IPR045847 GO:0003700|GO:0006355
Lal12g0816 310 Gene3D - 117 181 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0816 Lal-Chr12 6460931 6463939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0816 10 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 52.825 1.10e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g0816 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0816 - - gmx:100785826 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0816 12 6460931 6463939 Lal13g0963 13 6860419 6863290 LSH