Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0815 ATGGTGCTTGGAAGAAGAGTGATGAGTTGGAGAAGGGTTGCTAAGACTCTTCAAGCTCTCATAGCTCATTCCTTACTCTTTTCTTTTACTCTTATCCTTTCTCTCAAGCTTGATCATCTTCTTCCGTACACATGGACATGGTGTTTGCCGTCGGTAATGTTCTCAACCAAATCTACATTGGAGAATAATGATGAAGGAATTCATGCTGTCAAGGTTGTATTTTCTCCTCTTTGGCTTTTTCATGCTGTAGTAGCTCGAGGCAGGTTTTCATTGCCTGCTCCTTCGATGCCTCATGGTCGCCAATGGGCTCCTTCTCATTCAATCCTAGCAACACCATTACTTGTTGCATTTGAGCTACTTCTCTGTATGCATCTTGGCAGCAGTTACGCGGTGAATTTAAAGATTGTCTTCTTACCCCTCATAGCTTTTGAAGTGGTGATTTTGATTGATAACATCAGGATGTGTAGAGCTTTGATGCCTGGAGATGATGAAAATTTGACCGATGAAGCGGTTTGGGAAACTCTTCCTCACTTCTGGATTTCAATATCCATGGTCTTCTTTGTTGCTGCTACAGTATTCACCCTTCTAAAGTTATGTGGTGATGTTGCTGCTCTAGGTTGGTGGGACTTATTTATTAACTTTGGCATTGCACAGTGTTTTGCATTTCTTGTTTGTACCAAGTGGCACAATCCAACAATTCATGGAAACAGTCATATTATAGAACCGTGTTCTTCATCAAGTAGCTTAAGATATTCGTCGTCAAATACCATGAGATACATGGAATGGAATAGTAGAAGCTTTCTCGTTTCCTCAAGTGAAGATAGGCAGCAAAATGGGTTCTGCAATCTACAGGACATTGGAGGGCATTTTATGAAAATTCCATTCATTTGTTTCCAATTGCTTCTTTTTATGCATTTAGAGGGAACACCATCAGATGCAAAATATATGCAACATTGGATCATATTTTCTCCTCTTCTTTTGTTGCAAGGAGCCGGAGTGTTATTCGCAGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACAGTGGAGATGTTCCTAGAACATACACATCTATAGCATCAAAATCCCTTGGTTGCTTTGGGTTCTTTCATCATGGCTCAAGGTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGGCTTTATTGTGCTACGAGTTCCGGGTATAATACTTTCTCCCCTGATACAGTGAAGAAAATGCCTAGAGCAGATCTTGTTGACGAGATTTGGAGACTACAAGCTGCATTGGGTGAGCAAACAGAAGTTACAAAATATAGCCAGGAGGAGTATGAAAGACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTTGAAGAGCAGATTAATGTGGTCCTGCTTCCCTGTAAGCATCACATTATTTGTCGTACTTGCAGCGAAAAATGTAAAAGGTGCCCGGTCTGCCGTGTCGTGATTGAGGAACGAATGCCTGTATATGATGTGTAG 1503 0.4065 MVLGRRVMSWRRVAKTLQALIAHSLLFSFTLILSLKLDHLLPYTWTWCLPSVMFSTKSTLENNDEGIHAVKVVFSPLWLFHAVVARGRFSLPAPSMPHGRQWAPSHSILATPLLVAFELLLCMHLGSSYAVNLKIVFLPLIAFEVVILIDNIRMCRALMPGDDENLTDEAVWETLPHFWISISMVFFVAATVFTLLKLCGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGNSHIIEPCSSSSSLRYSSSNTMRYMEWNSRSFLVSSSEDRQQNGFCNLQDIGGHFMKIPFICFQLLLFMHLEGTPSDAKYMQHWIIFSPLLLLQGAGVLFAAYRLIEKIVLLLYSGDVPRTYTSIASKSLGCFGFFHHGSRLLGWWSIDEGSREEEARLYCATSSGYNTFSPDTVKKMPRADLVDEIWRLQAALGEQTEVTKYSQEEYERLQNEKILCRVCFEEQINVVLLPCKHHIICRTCSEKCKRCPVCRVVIEERMPVYDV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0815 500 Pfam Transmembrane Fragile-X-F protein 72 328 IPR019396 -
Lal12g0815 500 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 5 500 - -
Lal12g0815 500 SMART ring_2 453 487 IPR001841 -
Lal12g0815 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 499 IPR013083 -
Lal12g0815 500 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 5 500 - -
Lal12g0815 500 SUPERFAMILY RING/U-box 443 496 - -
Lal12g0815 500 Pfam Zinc finger, C3HC4 type (RING finger) 451 493 - -
Lal12g0815 500 ProSiteProfiles Zinc finger RING-type profile. 453 488 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0815 Lal-Chr12 6449569 6456953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0815 8 500 C3H Transcription Factor Family AT1G73950 60.479 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0815 - - gmx:113000756 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0815 12 6449569 6456953 Lal13g0961 13 6851713 6858091 LSH