Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0814 ATGGAGGGAGTTAGTTGCACCGACGAAACCACAACCAACGACTCACTTTCTATATCTCTTCCCCTCAAACTATTCTCCCCATCGCCGGCCAACACTCTCAACCGTGTCGGTAGCACCACCAGCACCGTCGTCGATCCCAACGGTGTTTGCGGCGGCGCAGAAGTCGAATCCCGGAAACATCCCTCCTCTAAATTCAAAGGTGTGGTGTCACAGCCTAATGGACGCTGGGGCGCGCAGATTTACGAGAAACATCAGCGCGTGTGGCTCGGCACCTTTAACGATGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCCGTGAGATTCCGCGGCAATGACGCCGTTATAAACTTCAAGATCTTCTCCGGCGACGATTCCGAAGTTGGAGAAATCGAGTTCATGAACTCGCATTCCAAGTCTGAGATCGTCGATATGCTCCGAAAGCACACCTACCACGACGAGCTTCTACATAGTAAGAACAGCACGTGCGGGAAGCAACGACGAAACCTTGATAACGCTGCAACGACGTCGTTTGGAATTGGAGGCATGTGCGAGATGAAAGCGAGTGAGGTTCTGTTCGAGAAAACTGTTACGCCGAGTGACATCGGGAAGTTGAATCGATTAGTTATACCGAAACAACACGCGGAGAAGCATTTTCCGTTAGGCGGTGGAAAATCGCCGTCGACAGCGGCGGCGAAGGGAGTGCTTTTGAACTTTGAGGACGTTGGAGGGAAAGTATGGCGGTTTCGTTACTCATATTGGAATAGTAGCCAGAGCTACGTTTTAACTAAAGGGTGGACCCGGTTCGTTAAAGAGAAGAGCCTAAAAGCTGGTGACGCGGTCCGGTTTTACCGGTCTACTGGACCGGACAGACAGCTCTACATTGATAGCAAGAACCGGAGTGATGATATTTGTGCTAATGCTGGTGAGTTGTATATTCCTGTTGGACCGGTTCTTGAACCGGTTCAGATGGTTCGGCTTTTTGGAGTCAACCTTTTAAAATTACCCGGTTCTGATGAGGTTGGTGGTAGTTGA 1035 0.5082 MEGVSCTDETTTNDSLSISLPLKLFSPSPANTLNRVGSTTSTVVDPNGVCGGAEVESRKHPSSKFKGVVSQPNGRWGAQIYEKHQRVWLGTFNDEDEAARAYDIAAVRFRGNDAVINFKIFSGDDSEVGEIEFMNSHSKSEIVDMLRKHTYHDELLHSKNSTCGKQRRNLDNAATTSFGIGGMCEMKASEVLFEKTVTPSDIGKLNRLVIPKQHAEKHFPLGGGKSPSTAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWTRFVKEKSLKAGDAVRFYRSTGPDRQLYIDSKNRSDDICANAGELYIPVGPVLEPVQMVRLFGVNLLKLPGSDEVGGS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0814 344 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 344 - -
Lal12g0814 344 ProSiteProfiles AP2/ERF domain profile. 64 119 IPR001471 GO:0003700|GO:0006355
Lal12g0814 344 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Lal12g0814 344 SUPERFAMILY DNA-binding pseudobarrel domain 192 296 IPR015300 -
Lal12g0814 344 CDD AP2 63 120 IPR001471 GO:0003700|GO:0006355
Lal12g0814 344 Pfam AP2 domain 63 111 IPR001471 GO:0003700|GO:0006355
Lal12g0814 344 SUPERFAMILY DNA-binding domain 63 119 IPR016177 GO:0003677
Lal12g0814 344 ProSiteProfiles B3 DNA-binding domain profile. 193 299 IPR003340 GO:0003677
Lal12g0814 344 CDD B3_DNA 192 286 IPR003340 GO:0003677
Lal12g0814 344 SMART rav1_2 64 125 IPR001471 GO:0003700|GO:0006355
Lal12g0814 344 SMART B3_2 193 299 IPR003340 GO:0003677
Lal12g0814 344 Gene3D - 183 309 IPR015300 -
Lal12g0814 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 344 IPR044800 GO:0003700
Lal12g0814 344 Pfam B3 DNA binding domain 193 293 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0814 Lal-Chr12 6438822 6439856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0814 1 332 RAV Transcription Factor Family AT3G25730 58.036 1.22e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lal12g0814 B3 1.9e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0814 K09287 - gmx:100801107 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0814 12 6438822 6439856 Lal13g0958 13 6799801 6800916 LSH