Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0799 ATGACAGATTTTCAGCATTTACAGAGGAAGCCTGAACCTGAACCTGCTGAAGCTCGTGCCGAGTATGAGTGTGGGCTGGAGGAGTTTATGCATGGTCAATTGGATGATTGTATTTCATTTGCTTCATGTAGCTCTTCTCACGCTCAAGATGATGATGAAGAGGAGGGTGATCAGCTGGTAAGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTGGCAGAGTCATCAGCTGCGCGGAGGCGCCATTCACGGATTTTGAGTAGATGGGCTGCCCGACAGGCACAGGAGATGATGACAACTATTGAGAGGAGGAATCGGGAATCCGAGTTGATGGCACTCGCGGGATTACACACGGTCTCTATGTTGGACTCTTCTTTTCTGAGGGGATCACAATCTCCGACTTCTGGACAGGAGGGGGCTGTTGAGCGGCCGAGTACTCAGGCATCTACCATTCTCCAGATGTGGCGTGAATTAGAGGATGAACATTTATTGAATCGGGCACGTGAAAGGATGAGGGAAAGATTGCGGCAGCAAAGGAGTTCTGAGTCTGAGACCAATGTGTCAAGTACCATGTCTGGCAGTAGAGGCACTGAGAATCAAAGTAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACACGATCACATTGGACCACAGAATGCACGTGGTGATGGTAATGGGTCTAGCTGGGAGCAATCTCCTGATTTTGGCGAAGTTGAGAGAGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGATTCGGAGAAACAATAACCGTAGACCAGAGTGGCTTGGAGAGACTGAGCGTGAGAGGGTAAGAATTGCCAGGGAGTCGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGGAGCCGGAGGGATGCTCAAGTGAGTGATGGTGCCCAAGTCAATCGAGTGCGTGATGTAGTAGCTGATCATGATGATGGCCATCCAGAGCATGTCCGCCGGGACATGTTGAGGCTGCGTGGAAGACAGGCTTTTGTTGACTTGCTTGTGAGGGTAGAAAGGGAAAGACAGAGAGAGCTGCAGGCCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGCATTCAGTCATTGCTCAGAGGTAGATTCCTCCGGAATGAAAGACCTGTTGAAGCTGAGAGGCCTCCTTCTGTGGCCGCTAGCGAATTAGTTCAGTTAAGACAACGACACACGGTCTCTGGTTTAAGGGAGGGGTTTCGCTCAAGATTAGAGACAATCGTTCGTGGTCAAGCAGTCACCAATCCTGATGCCACACCTAACAGTAACATTAGTGAAACAAGAAGTGATGAGAACCAAGGAAACAATCTGGTAGATGGCCAGCAAGAAAATTATGAACAAGATCAGATTAGAAGCCTGGAAAGTGATGTGCGTCACTTGCCGAATCAAACAGGACCTTTGGAGAGCAGCACAAATGAAAATATTAGTTGGTTTGAAGCTGAAAATGAAAGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGTGGAGGAAACTGGCAGCAGAGAACTGATGGTCCATTCAATCATTCAAGAGATGGAAGCACAGTCGGTGATTGGCCACAGGATACTATGAGAAATTTAGCTAGGGAAGACCCTCACCCACAAGAGGCTCAAAGAATATGGCATGAGGACAGCACAAGGGAAACTGTTGGTAATTGGTCCGAAGGACTTTCTGAAGCTTCAAGGAATCAGCATGGCGTTCCGTTTAGAAGAATCAATACATTTCATCCTCCCGATGATGATAATGTGTACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGCTTCCGAGAAAGTTTGGACCAACTAATACAGTCGTATGTGGAAAGGCAAGGTCATGCACCAATTAACTGGGATTTTCACAGAAACTTGCCAACTCCAATTCCTGCCTCACCTGAACGGGACTCTGATCAGCAAGGTGATGAACTTAATCAGGGTCAGCGTGAAGCCATTAACAGACCTTCATTTGTGATGCCTTCTCCACCTGTACCTCCACCACAACCACTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATGGAATGGGAGATGATGAATGATTTAAGATCTGATATGGCAAAACTTCATCAAGGCATGAACCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAGCTGGAGCTGCAGCGCTCTGTCAGACAGGAAGTCTCTGCAGCTTTGAACCACTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGTCATGTGAAAAAAGGAAATTGCTGTGTTTGTTGTGATAGCCATATTGATTCCCTTTTATACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAACGAGTTAGTTCGTGGCGGAGGTAAGTGTCCTTTATGCCGAGCACCCATAATTGAGGTGGTCCGAGCTTATTCCATACTTTAA 2565 0.4733 MTDFQHLQRKPEPEPAEARAEYECGLEEFMHGQLDDCISFASCSSSHAQDDDEEEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMMTTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASTILQMWRELEDEHLLNRARERMRERLRQQRSSESETNVSSTMSGSRGTENQSSLGDASESENDYGTWSHDHIGPQNARGDGNGSSWEQSPDFGEVERERVRQIVRGWMESGISDHSSNVIRRNNNRRPEWLGETERERVRIARESVQMTSQQRGSRGSRRDAQVSDGAQVNRVRDVVADHDDGHPEHVRRDMLRLRGRQAFVDLLVRVERERQRELQALLEHRAVSDFAHRNRIQSLLRGRFLRNERPVEAERPPSVAASELVQLRQRHTVSGLREGFRSRLETIVRGQAVTNPDATPNSNISETRSDENQGNNLVDGQQENYEQDQIRSLESDVRHLPNQTGPLESSTNENISWFEAENERGNWQEQIAEDGGGNWQQRTDGPFNHSRDGSTVGDWPQDTMRNLAREDPHPQEAQRIWHEDSTRETVGNWSEGLSEASRNQHGVPFRRINTFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPINWDFHRNLPTPIPASPERDSDQQGDELNQGQREAINRPSFVMPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEMEWEMMNDLRSDMAKLHQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNHSAGENGLGAETSDDGSKWGHVKKGNCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIIEVVRAYSIL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0799 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 854 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 655 681 - -
Lal12g0799 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 44 80 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 294 320 - -
Lal12g0799 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 852 IPR013083 -
Lal12g0799 854 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 854 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 294 315 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 439 466 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 54 80 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 173 245 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 182 212 - -
Lal12g0799 854 MobiDBLite consensus disorder prediction 127 149 - -
Lal12g0799 854 CDD mRING-HC-C3HC5_NEU1 801 841 - -
Lal12g0799 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Lal12g0799 854 SUPERFAMILY RING/U-box 801 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0799 Lal-Chr12 6240057 6246565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0799 779 848 C3H Transcription Factor Family AT3G06140 37.143 1.46e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0799 - - lang:109336295 1386.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0799 12 6240057 6246565 Lal13g0905 13 6239375 6246460 ECH
Lal12g0799 12 6240057 6246565 Lal12g0799 12 6240057 6246565 ECH