Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0790 ATGGGCCGTGAAACCCATCTCCTCCCACCACCACCACCACCACCACCAACCCCATCCTCCACCACCTCCTCCACTCCTCCACCTTCACTTCCACTCTCTGTGATGGCGCCACCGCCGTCATCAGCTGCATCCGGGTCAACATCAGTTGTAGTTGCAGGTGCAGCTTTATCAGCACCTTCTCCTACTTCTCTTGCTCCTGGGTTCAGGTTTCACCCTACTGATGAAGAGCTTGTTATTTATTACCTAAAGCGCAAGGTTAGTGGAAAAAGCTTCCGATTTGATGCAATATCCGAGGTGGACATTTACCGAAGCGAGCCTTGGGACCTTGCAGATAAGTCAAGGTTGAAGACAAGGGACCAGGAATGGTATTTCTTTAGTGCATTGGACAAGAAATATGGGAATGGTGGTAGAATGAACAGAGCTACAAACAAAGGGTACTGGAAAGCCACCGGGAATGACCGTCCAGTTAAGCATGAACAAAGGACTGTGGGTTTGAAGAAAACTTTGGTGTTTCATAGCGGTCGTGCTCCGGACGGGAAAAGGACCAATTGGGTCATGCATGAGTACAGACTTGTAGATGAAGAGCTGGAGAAGGCTAGGACTGCAATTGGGTCCTCTCAGGATGCATTTGTTTTGTGTAGAGTATTTCACAAGAATAACATAGGACCTCCAAATGGACAACGATATGCACCTTTCGTCGAAGAGGAGTGGGATGATGAGCCAGGACTAGTTCCTGGGGCACAATCTGCGGAACCCATTTCTGTTGCCCAACGACCATGTGTCGAAAGCAATGACCGTGTTTTATGTATTGAAGGGAGAAAAGACGTTGAGCAGGATACTGAATCTGTTACCAAGGCTCCATTCGATGTCAACAAGCTTCCTATAGAGACTCAAAATCTTCTGGCTGTCTGCAAGAGGGAGAGCATGGCCGAGTTCCCATCACCCGAAAAGGAGGACTCTAAGCTTATGCAGGATGCACGTCCTTCACCCCAACCAGATAATCACAAGGCTTTCTCTCAAATATACAAAAGAAGGCGGTATAACTTGAACAACCATTTGAATGCTTCTGGAGACTCAATCCGAACCAGCCAGGATCCATGCTCGTCGACAATAACTACTGCTGCAACAACACTCCCGGCGGAAACTGCCATCACTAACCCCTCGACTACCAACACTGCGCCAAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCTCTGATGGAATCTCTTGAATCGAAGGAAGTTCAGTCACCAGATTTTGATGCCGATAATCTCGAGTTAACCGTGCCTCCTAGCTCAGTAAAATTCATCAAACACTTGCAGAGTGAGATGCAAAAGCTTTCTGCTGAAAGGGAGGCTATGAGGTTTGAGATGATGAGTTCTCAAGCTATGGTTAACATTCTCCAGTCCCGGGTCGATCACTTGAACAAAGAAAATGAGGAATTGAAGAAGATGGTCGAAAATCGTTAG 1473 0.4718 MGRETHLLPPPPPPPPTPSSTTSSTPPPSLPLSVMAPPPSSAASGSTSVVVAGAALSAPSPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVKHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELEKARTAIGSSQDAFVLCRVFHKNNIGPPNGQRYAPFVEEEWDDEPGLVPGAQSAEPISVAQRPCVESNDRVLCIEGRKDVEQDTESVTKAPFDVNKLPIETQNLLAVCKRESMAEFPSPEKEDSKLMQDARPSPQPDNHKAFSQIYKRRRYNLNNHLNASGDSIRTSQDPCSSTITTAATTLPAETAITNPSTTNTAPKKHFLSALVEFSLMESLESKEVQSPDFDADNLELTVPPSSVKFIKHLQSEMQKLSAEREAMRFEMMSSQAMVNILQSRVDHLNKENEELKKMVENR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0790 490 MobiDBLite consensus disorder prediction 310 324 - -
Lal12g0790 490 MobiDBLite consensus disorder prediction 1 35 - -
Lal12g0790 490 Pfam No apical meristem (NAM) protein 66 191 IPR003441 GO:0003677|GO:0006355
Lal12g0790 490 MobiDBLite consensus disorder prediction 310 335 - -
Lal12g0790 490 Coils Coil 466 486 - -
Lal12g0790 490 Coils Coil 438 458 - -
Lal12g0790 490 Gene3D NAC domain 73 221 IPR036093 GO:0003677|GO:0006355
Lal12g0790 490 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 56 488 - -
Lal12g0790 490 SUPERFAMILY NAC domain 62 219 IPR036093 GO:0003677|GO:0006355
Lal12g0790 490 ProSiteProfiles NAC domain profile. 64 218 IPR003441 GO:0003677|GO:0006355
Lal12g0790 490 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 56 488 - -
Lal12g0790 490 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0790 Lal-Chr12 6149833 6155108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0790 402 485 NAC Transcription Factor Family AT3G10480 46.591 3.90e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal12g0790 NAM 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0790 - - gmx:100808783 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0790 12 6149833 6155108 Lal12g0790 12 6149833 6155108 ECH
Lal12g0790 12 6149833 6155108 Lal13g0898 13 6190533 6196927 LSH