Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0788 ATGGAAGCACCAGAGGAACTCTCTTTGGGTGGGTCCAAAGAGCAAATCAACATTGTCAAAGGTAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCAATCACTCTTATTTCGCCTACCGGAGAAGGACAAAAAGGAGACCACAGGGTCGAAGATGTCGCGACCCAATTTTTGGTTGGAAACCGGTTCTGCTACTATAATAATATTCATGACAATAACAGCAACAACAACAAAGATAATAACAATAACAAAAATAGCAGCTGCACCCCTACCACTTCTTGTGGAGGATTACAGGACAACACCAATGAAGAAGAGGATATGGCCAATTGCCTTATCCTTTTAGCACAAGGACAATCCCGGGAATCCCCGAAACACGCGGCGGCCGGTGGCAGTGAAGACTTGACAGGAGGCATGAATTACAGTAAGTACAGCAGTAAAAAATTCTTGGAAGGAGCTGGTATAGGGTCTGGAAGAGAAGGGTATTATGTATATGAATGCAAGACATGTAGTAGAACTTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCTAGTCACAAGAAACCTAAGGCCATTAGTACTCAAGAGAAAAAGCAACAAAATTTGTTGTTATCTTCAGATGAAGAAGAGTTCCAATTCAAGACCAATAATAATAGTAGACCAATTTCTGTTCAATTCAATATCAGAGGGAATTTGTACAACAATAAGTGTAAGGTACATGAGTGCTCTATTTGTGGTGCTGAATTCACATCAGGGCAAGCATTGGGTGGCCATATGAGGCGGCACCGAGCACCGGTTGGGACTAACACCACACTCTCTTTAACACCAATGGCTTTGGAATCAGAAGAAGATCATCAAGCTAGAAAAAGAAGGAATGTTTTGCCTTTGGATTTGGATCTTAACCTTCCTGCACCAGAACCACAAGATGATCCTAGAGAATCCAAGTTTGCCTTACCATCCAAGCAACAACAACAACAAGAACAACAACAAGGACAAACAAAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAACAATCTAGTCTTGTTTTCTCAACCCCATCTTTGGTGGATTGTCATTATTAA 1107 0.4182 MEAPEELSLGGSKEQINIVKGKRTKRVRPQSPIPFSITLISPTGEGQKGDHRVEDVATQFLVGNRFCYYNNIHDNNSNNNKDNNNNKNSSCTPTTSCGGLQDNTNEEEDMANCLILLAQGQSRESPKHAAAGGSEDLTGGMNYSKYSSKKFLEGAGIGSGREGYYVYECKTCSRTFPSFQALGGHRASHKKPKAISTQEKKQQNLLLSSDEEEFQFKTNNNSRPISVQFNIRGNLYNNKCKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALESEEDHQARKRRNVLPLDLDLNLPAPEPQDDPRESKFALPSKQQQQQEQQQGQTKQQQQQQQQQQQQQQQQSSLVFSTPSLVDCHY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0788 368 Gene3D Classic Zinc Finger 148 221 - -
Lal12g0788 368 Gene3D Classic Zinc Finger 222 295 - -
Lal12g0788 368 SMART c2h2final6 167 189 IPR013087 -
Lal12g0788 368 SMART c2h2final6 243 265 IPR013087 -
Lal12g0788 368 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 368 - -
Lal12g0788 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Lal12g0788 368 SUPERFAMILY beta-beta-alpha zinc fingers 166 265 IPR036236 -
Lal12g0788 368 MobiDBLite consensus disorder prediction 76 95 - -
Lal12g0788 368 MobiDBLite consensus disorder prediction 320 361 - -
Lal12g0788 368 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Lal12g0788 368 Pfam C2H2-type zinc finger 242 268 - -
Lal12g0788 368 Pfam C2H2-type zinc finger 166 192 - -
Lal12g0788 368 PANTHER ZINC FINGER PROTEIN ZAT5 12 368 - -
Lal12g0788 368 MobiDBLite consensus disorder prediction 297 368 - -
Lal12g0788 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 265 IPR013087 -
Lal12g0788 368 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0788 Lal-Chr12 6129885 6130991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0788 1 368 C2H2 Transcription Factor Family AT5G04390 40.786 1.09e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0788 zf-C2H2_6 7.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0788 - - gmx:100799383 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0788 12 6129885 6130991 Lal13g0896 13 6178285 6180093 ECH
Lal20g0117 20 767694 768548 Lal12g0788 12 6129885 6130991 ECH
Lal1g1797 1 20297015 20297863 Lal12g0788 12 6129885 6130991 ECH
Lal13g0896 13 6178285 6180093 Lal12g0788 12 6129885 6130991 ECH
Lal2g0316 2 1887267 1888184 Lal12g0788 12 6129885 6130991 ECH
Lal9g0297 9 1909193 1910110 Lal12g0788 12 6129885 6130991 ECH
Lal1g0404 1 2487392 2488330 Lal12g0788 12 6129885 6130991 ECH
Lal10g1218 10 18542256 18543194 Lal12g0788 12 6129885 6130991 ECH
Lal12g0788 12 6129885 6130991 Lal12g0788 12 6129885 6130991 ECH
Lal12g0788 12 6129885 6130991 Lal13g0896 13 6178285 6180093 LSH
Lal12g0788 12 6129885 6130991 Lal24g0712 24 5314441 5319520 LSH