Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0787 ATGTTTTCTAAAATGATACATCCACTTGAAGGAAATGAAGACATGATGATGCAGTTGCACAGTGATGGTTCAAACCATAGTAGTCACATTGGAGACACGTGTGTTGTTTTGACATCTGATCCAAAACCTCGTCTTCGTTGGACTTCTGACCTTCACAACCGTTTTGTTGATGCTGTTACTCAACTTGGGGGTGCTACTAACACCCTCTCCTCCTTCGTTCGGCACCGCCGTCCACCACCTGTCTCCGGCATTATTCGTAAGATCGTGGGTGTTGGATACAAAGCTAGAGCTGAAGATGCAGGGCGTCTATTGTATCTCAAATTGGGATACAGTCATGAGGTTGAGTTGCTTGTGCCTCCCGCAGTTCGTGTTTTCTGCTTCAAAAACAATGTAATTTGCTGCACTGGAATAGACAAGCAAAGGGTGCATCAGTTTGCTGCTACTGTTCGGAATTGTAAGCCACCTGAAGTTTACAAAGGTAAGGGCATAATGTATGTTGATGAAGTTATCAAGAAGAAACAAGGAAAGAAGTCTAAATGA 540 0.4352 MFSKMIHPLEGNEDMMMQLHSDGSNHSSHIGDTCVVLTSDPKPRLRWTSDLHNRFVDAVTQLGGATNTLSSFVRHRRPPPVSGIIRKIVGVGYKARAEDAGRLLYLKLGYSHEVELLVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRNCKPPEVYKGKGIMYVDEVIKKKQGKKSK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0787 179 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 65 IPR006447 GO:0003677
Lal12g0787 179 Gene3D - 85 178 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal12g0787 179 PRINTS Ribosomal protein L6 signature 100 116 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal12g0787 179 PRINTS Ribosomal protein L6 signature 142 163 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal12g0787 179 ProSitePatterns Ribosomal protein L6 signature 1. 155 163 IPR002358 GO:0003735|GO:0005840|GO:0006412
Lal12g0787 179 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 86 178 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal12g0787 179 PANTHER RIBOSOMAL PROTEIN L6-RELATED 86 178 - -
Lal12g0787 179 SUPERFAMILY Ribosomal protein L6 87 177 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal12g0787 179 Pfam Ribosomal protein L6 89 165 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0787 Lal-Chr12 6120451 6125735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0787 8 64 G2-like Transcription Factor Family AT4G13640 61.404 1.30e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0787 K02933 - gmx:100780944 186.422