LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal12g0785	ATGGGACTTGCAGTGCCTAATGCTGATGATTTGCTGAGTGATAAAGCATCACTGATGAGAGAATCTCTTCAAAGAAGCCAAATAATCACAGATAAAGTTGCTTCAATCCTTGGTTCCTTTGATCACCGTCTTTCTTCCCTTGAAACCGCTATGCGCCCAACTCAGGTTAGGACTAATTCTATTAGGAAAGCTCATGAGAATATTGATAAGACTTTGAAGGCTGCAGAGGGAATATTGGCTCGTTTTGATCAATTTCGTCAAGCGGAGGCAACAATACTTAAAGGGCCACACGATGGCATGGAAAACTATCTTCAAGCCATTGCGGAGCTGAGAAGCAACATTCAGTTTTTTGGCAATATCAAAGGTTTTAAGAGTAATGATGGTATTATCAACCATGGCAGTAGTTTGCTAGCTAAAGCTATTTCTAAGTTAGAAGATGGGTTTAGGCAGCTATTATTATCTTACAGCAAACCAGTCGAACCTGAGTGCCTCTTTGATTGCCTTCCAAACTCAATGCGGCCTTCAACAGGATCGCCTGCCCATGATGATGGTCCTAATGGCAAGAATCATTCTAATCACCATTCTGAGGCACACGATATTGCTGATGCTATTGTATATACACCACCAGCTCTTATTCCACCAAGTGTTTTGCCGCTGCTACATAATTTGGCTCAGCAAATGATTGATGCTGGTCATCAACATCACTTACTTAGTACATACAGAGATGCTCGTTCTAATGTATTAGTAGAAAGCCTACAAAAGCTTGGGGTTGAAAAAATCGATACAGACGATGTTCAAAAACTACAATGGGAAATTTTGGAAGCCAAAATTGGAAACTGGATTCATTTCATGCGCATAGCTGTCAAATTGTTGTTTGCTGGTGAAAGGAAAGTTTGTGATGAAATATTTGAAGGCTTTGATTCTCTCAGCGAACAGTGTTTTGCTGAGGCGACTACAAACAGTGTTTCTATGCTACTTAGTTTTGGAGAAGCAATTGCCAGAGGCAAGAGATCCCCAGAAAAGTTATTTGTGCTTTTGGACATGTACGAAATAATGCAAGAGCTCCATTCAGAGATCGGAACACTCTTTAAAGGCAAGGCTTGCGTGGAAATAAGAGTAGCTGCAGCGGGTTTGACAAAACAACTTGCACAAACAGCCCAGGAGACCTTTGGAGATTTTGAAGAAGCTGTTGAGAAGGATGCTACAAAGACTGCAATAACAGATGGAACTGTCCATCCTTTGACAAGCTATGTCATTAACTATGTGAAGTTTTTATTCGACTACCGGTCCACCTTGAAGCAACTTTTCCAAGAATTTGAAGATACGGAGGATTCTCCACAGCTAGCATCTGTAACAATGCGCATAATGCAAGCTTTGCAAACTAATTTAAATGGGAAATCAAAGCAATATAAAGACCTCGCATTGACACATCTTTTCCTCATGAACAATATTCATTATATTGTTAGATCAGTTCGGAGGTCTGAAGCGAAGGATTTGCTGGGGGACGATTGGGTACAAAGACATAGGAGGATTGTTCAGCAGCATGCAAATCAATACAAAAGAAACGCTTGGGCAAAGATTCTTCAGTGCCTATCTATCCAGGGCCTTGCCTCATCGGGTGGCGGGAGTGGTACTGCCGGTGATGGTGGACCTGGAAGTAGCAGTGGTGCTTCAAGAGCAGTTGTTAAAGATAGGTTTAAGACATTCAATGTTATGTTTGAGGAACTCCATCTGAGACAATCTCAATGGACAGTTCCTGACAGCGAATTGCGGGAATCGCTTAGGCTTGCAGTCGCCGAAGTCTTGCTGCCTGCCTATAGATCATTTGTGAAACGTTTCGGGTCTCTTGTAGAGAGTGGAAAGTCTCATCAGAAATACATCAAATACACACCGGAAGATCTAGATCGAATGTTGGGTGAATTTTTCGAAGGAAAATCATCGATCGAAACAAGGCGCTAG	1959	0.4186	MGLAVPNADDLLSDKASLMRESLQRSQIITDKVASILGSFDHRLSSLETAMRPTQVRTNSIRKAHENIDKTLKAAEGILARFDQFRQAEATILKGPHDGMENYLQAIAELRSNIQFFGNIKGFKSNDGIINHGSSLLAKAISKLEDGFRQLLLSYSKPVEPECLFDCLPNSMRPSTGSPAHDDGPNGKNHSNHHSEAHDIADAIVYTPPALIPPSVLPLLHNLAQQMIDAGHQHHLLSTYRDARSNVLVESLQKLGVEKIDTDDVQKLQWEILEAKIGNWIHFMRIAVKLLFAGERKVCDEIFEGFDSLSEQCFAEATTNSVSMLLSFGEAIARGKRSPEKLFVLLDMYEIMQELHSEIGTLFKGKACVEIRVAAAGLTKQLAQTAQETFGDFEEAVEKDATKTAITDGTVHPLTSYVINYVKFLFDYRSTLKQLFQEFEDTEDSPQLASVTMRIMQALQTNLNGKSKQYKDLALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRNAWAKILQCLSIQGLASSGGGSGTAGDGGPGSSSGASRAVVKDRFKTFNVMFEELHLRQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGSLVESGKSHQKYIKYTPEDLDRMLGEFFEGKSSIETRR	652

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal12g0785	652	MobiDBLite	consensus disorder prediction	174	194	-	-
Lal12g0785	652	PANTHER	EXOCYST COMPLEX COMPONENT EXO70A1-LIKE	36	648	-	-
Lal12g0785	652	Pfam	Exo70 exocyst complex subunit	279	639	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
Lal12g0785	652	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	36	648	IPR004140	GO:0000145\|GO:0006887
Lal12g0785	652	Gene3D	Exocyst complex component Exo70	77	652	-	-
Lal12g0785	652	SUPERFAMILY	Cullin repeat-like	78	643	IPR016159	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal12g0785	Lal-Chr12	6103806	6112407	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal12g0785	3	652	EXO70 exocyst subunit family	AT5G03540	70.162	0.0	921

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal12g0785	K07195		-	gmx:100813987	1033.09

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal12g0785	12	6103806	6112407	Lal13g0891	13	6130893	6142123	LSH
	Lal12g0785	12	6103806	6112407	Lal24g0704	24	5243398	5252627	LSH

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