Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0783 ATGAATAACACTTCAAATTCTGATAACCCTTCAGGTGAATCAAACTTATCTCATTATTCTGCTGCATTATGTGTTGGATTTCTTCTCCTCATCACATTCATGGCTATCACTGCACATTGCTGTTCACATAGAAACTTGCAGAACACGCAATCTACTAGTCACAGAACTATAGCCATACATAGAGATAATATTTCAGATATAAGTATCCAAGTTCTTGGTGAAGAAGAATATGAAGCAATTGTGAAAAATTATCCTGTGTTGTTGTACTCTCAAGCCAAGCTTCAAAATCTTGATAATTCTTCATCATTTCTAAGTTGTTCAATATGCTTAGCAGATTATAAGGATTCAGAATTGTTAAGGTTGTTGCCAGATTGTGGTCACTATTTTCATAAGGATTGCATTGATATATGGTTAAGGTTACAAGATGCTGATAAATAA 438 0.3356 MNNTSNSDNPSGESNLSHYSAALCVGFLLLITFMAITAHCCSHRNLQNTQSTSHRTIAIHRDNISDISIQVLGEEEYEAIVKNYPVLLYSQAKLQNLDNSSSFLSCSICLADYKDSELLRLLPDCGHYFHKDCIDIWLRLQDADK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0783 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 143 IPR013083 -
Lal12g0783 145 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 12 141 - -
Lal12g0783 145 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 141 IPR045899 -
Lal12g0783 145 Pfam RING-like zinc finger 106 134 IPR001841 -
Lal12g0783 145 SUPERFAMILY RING/U-box 85 143 - -
Lal12g0783 145 ProSiteProfiles Zinc finger RING-type profile. 106 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0783 Lal-Chr12 6084870 6086115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0783 19 140 C3H Transcription Factor Family AT5G06490 33.333 5.03e-22 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0783 - - adu:107466513 147.902