Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0757 ATGGAGCAAGAAGAACACGAAGTATATGGCGCAGACATACCCGAAGAAGTGGACATGGACGAAGAACAACAACAACAAGAACAACAACACAATCCTATCGATAACCCTAACAAGGAGTTAGGAGACATGAAGAAGAGGCTCAAGCAGATCGAAGACGAAGCTGCAGCGCTTCGCGAGTTACAAGCCAAGGTTGAGAAAGAAATGGGCGCTGTTCAAGAGGATCCGGTTGGTTCCTCTGCAACTCAAGCTGAGAAGGAGGAAGTGGATGCTAGATCTATCTACGTTGGTAATGTTGATTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACAGTGAACAGAGTCACAATATTGACAGATAAATTTGGTCAGCCAAAAGGATTCGCATATGTAGAGTTTGTTGAAGTTGATGCTGTTCAGAATGCTATCCTGTTGAACGAATCAGAATTGCATGGAAGACAACTTAAGGTGTCTGCTAAGCGCACAAATGTCCCTGGAATGAAACAGTATTATGGAAGAAGACCTATGGGTTTCCGAGGTAGAAGGCCTTTCATGCCACCTCCTTTCTATCCGCCAGCTGGTTTTGGAAGGTTTCCAAGGTACAGACGCCCCACAAGATACCGGCCGTACTAG 648 0.4522 MEQEEHEVYGADIPEEVDMDEEQQQQEQQHNPIDNPNKELGDMKKRLKQIEDEAAALRELQAKVEKEMGAVQEDPVGSSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNAILLNESELHGRQLKVSAKRTNVPGMKQYYGRRPMGFRGRRPFMPPPFYPPAGFGRFPRYRRPTRYRPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0757 215 SUPERFAMILY RNA-binding domain, RBD 80 189 IPR035979 GO:0003676
Lal12g0757 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 167 IPR000504 GO:0003723
Lal12g0757 215 SMART rrm1_1 92 163 IPR000504 GO:0003723
Lal12g0757 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Lal12g0757 215 CDD RRM_II_PABPs 92 163 - -
Lal12g0757 215 Coils Coil 33 70 - -
Lal12g0757 215 MobiDBLite consensus disorder prediction 1 44 - -
Lal12g0757 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 214 - -
Lal12g0757 215 Gene3D - 7 173 IPR012677 -
Lal12g0757 215 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0757 Lal-Chr12 5727377 5733721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0757 92 163 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 7.80e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0757 K14396 - gmx:100527139 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0757 12 5727377 5733721 Lal13g0872 13 5971533 5976471 LSH