Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0748 ATGTATTCTTTCAAAGACAAGTTTTCCCATTACCTTCCAAATTCCAATTCCAACTCCTCCCAGGCTAACCCCACCTCTAAAAATGATAAACCTCTGTCTTCATATTTATCCTACATTATCCCCTCAATCAGCTTTGGTGGATCCAAGACAAACAAACACGAACACGATTTTCAACCAATACAATCAGATTCTTTTGAGTATAATTATGAGAAGTTGGAGAATCAGGATGACAAATTGGATAATTATGTCGACTGTAGTCCCCCATGTAATAGCATGGATGTATTAAAAGATGAAATTATTGGTGAAGATCTGACCTCTAGAAACAGCAGCAGTAGTTCTGAAGTTTTTGAAGAAGCAAATGATCAACAAACTCCAAATACTTCTAAGAAGTCTGTGCTAAATCTTTCGGATGACTCTACTTTTATTTCTCCGGAGTTGTATGAATTTTTTGAGTCATGCCTTCCTAATATAGTTAAAGGACGTCAATGGGTCTTACTTTATAGCACATCGAAACATGGAGTATCACTTCGTACACTTATCCGCAAGAGTGCTGAACTTTCTTGTCCTTGCTTGCTGATTGCTGGAGATATGAAAGGTGCTGTGTTTGGCGGTCTGTTAGAGTGCCCCTTGAAACCTACACCAAAACGAAAATATCAAGGAACAAACCAAACCTTTGTCTTCACAACTATATATGGCCAGCCAACTCTGTTTCGACCTACTGGTGCCAACCGGTACTACTACATGTGTTTGAGGGACTTACTAGCTATTGGTGGTGGGGGTAATTATGCTTTATGCTTAGATGAAGATCTGTTAACCGGAACTAGCGGACCTTGCGACACATTTGGAAACAAAGGTCTGGCTCACAGTCCAGAGTTTGAGTTGAAGAATGTTGAGGGTGAAATTTCAATCCCTATTAGCAATCAAATTTTGGATCTTTGTGACTCTGAATTGTTCCAAGAGCCTCTTCAGAATTCTGATGTTACCTCAAGCTCAAATTGTTGCTATGATGAAAACTCCACATATGTAACAAATATATCTCTAGCTTTAGATGTAGACAATACTAAGTTAAATAGCACTAGCAATAATACAGTGACTACTCCAACTAGCACCAAAACCAACAACAACACAACCAATAGCATCAATCTTTCAATCATATTTGACTCACAAGAAGAAATTGATAATGACATAACTGCCTCAATAGACTTCTCATCATCCAAAACTTTCAATATTCCACAGTTTCTCCAAAACCAGCAAGAACAGTTTGGTAATTTCTCTTCTATGCAGCAGCCTAATGTGCAGCAAATAGCAGCATGTAATTTAGGTGTGGAGGGTTTTTCTCAGTATCATAATGACCCTATTGCACCACTCATTGGAGCTCCATTAACTTCTGTTTTTGAAGAGGATTGCATATCCTCTGTCCCCTCTTATATGCCTACCAACCCTTCATCTCAATCTTGCAATTTTCTTGGCCCTGGCATAGGACCATACATGCCTCATGCTCCTCTTACTACTGCCTTGTCGGCTGACCATTCCGGATTCTTTGGCGAGAGCATGCTTTTTGGTTCTGATATTCACACACAAGAGCCAGAATACGAAGCCGAAAATGGTGGTATGTTTTTTACAGATTCAATGCCACAGGTGTTTAGTCCTTCAAACCTTCAGGAACTTGGTGTTGTTGAGAATCAGAAGCTACTAGTTGGTGCTGGAAATTCTGCCATTTTGACAACAGAAATCTCAACATTGGAGGACTCTATCTTAAAGGTTGGAAAACTTTCTGTTGAACAAAGGAAAGAAAAGATCCATAGATACATGAAGAAAAGAAATGAAAGAAACTTTAGCAAGAAAATTAAGTATGCATGCCGAAAAACTCTAGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGAATTTGGAGATACACATAACAATCATAGATCTGCTAGTACCAATCATGAAGAAGATTATGAAGAAGTTGTTGTGAAAGAAGAAGTTGATATGGTTGATTCATCAGAGATCTTTGCTCATATCAGTGGAATAAACTCCTTCAAATACAATTATTCTATCCAATCATTGATTTGA 2091 0.385 MYSFKDKFSHYLPNSNSNSSQANPTSKNDKPLSSYLSYIIPSISFGGSKTNKHEHDFQPIQSDSFEYNYEKLENQDDKLDNYVDCSPPCNSMDVLKDEIIGEDLTSRNSSSSSEVFEEANDQQTPNTSKKSVLNLSDDSTFISPELYEFFESCLPNIVKGRQWVLLYSTSKHGVSLRTLIRKSAELSCPCLLIAGDMKGAVFGGLLECPLKPTPKRKYQGTNQTFVFTTIYGQPTLFRPTGANRYYYMCLRDLLAIGGGGNYALCLDEDLLTGTSGPCDTFGNKGLAHSPEFELKNVEGEISIPISNQILDLCDSELFQEPLQNSDVTSSSNCCYDENSTYVTNISLALDVDNTKLNSTSNNTVTTPTSTKTNNNTTNSINLSIIFDSQEEIDNDITASIDFSSSKTFNIPQFLQNQQEQFGNFSSMQQPNVQQIAACNLGVEGFSQYHNDPIAPLIGAPLTSVFEEDCISSVPSYMPTNPSSQSCNFLGPGIGPYMPHAPLTTALSADHSGFFGESMLFGSDIHTQEPEYEAENGGMFFTDSMPQVFSPSNLQELGVVENQKLLVGAGNSAILTTEISTLEDSILKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGDTHNNHRSASTNHEEDYEEVVVKEEVDMVDSSEIFAHISGINSFKYNYSIQSLI 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0748 696 PANTHER CCT MOTIF FAMILY PROTEIN 299 696 - -
Lal12g0748 696 MobiDBLite consensus disorder prediction 637 659 - -
Lal12g0748 696 Pfam CCT motif 596 638 IPR010402 GO:0005515
Lal12g0748 696 ProSiteProfiles TLDc domain profile. 140 305 IPR006571 -
Lal12g0748 696 SMART 109ultra 139 299 IPR006571 -
Lal12g0748 696 Pfam TLD 165 298 IPR006571 -
Lal12g0748 696 ProSiteProfiles CCT domain profile. 596 638 IPR010402 GO:0005515
Lal12g0748 696 MobiDBLite consensus disorder prediction 105 131 - -
Lal12g0748 696 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 299 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0748 Lal-Chr12 5670492 5681799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0748 596 657 C2C2-CO-like Transcription Factor Family AT5G57660 45.312 7.63e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal12g0748 TLD 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0748 - - aprc:113871720 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0748 12 5670492 5681799 Lal12g0748 12 5670492 5681799 ECH
Lal12g0748 12 5670492 5681799 Lal13g0866 13 5919366 5925143 LSH