Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0735 ATGGATCTTGTAAGCAAAAGATACTTGATCTATTCATCATCACAAGCATTTTCACCAATCACAAGTCAAGGGAGTTCTTCAATCTTTCACCCTCATATGCATCATTCAAGCACAAGTTTCCCAATCATAGCAATTGCTATAATAGGAATATTGGCCACAGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGCACCGCATTGACATCCTAAGACGTTTCTCTCCATCAACGAGGCGCGAAGATACATCGCCTATATACTCACCAGCGACCGAATCTCGCGGGCTAGACGAGGCAGTGATCAGATTAATCCCATTGATTCAATACAAGAGACAACAAGAAGAAAGTAGTAGTAGTAGTAGTATTGGTAATAGAGAGTTTGGAGAAAGAAGCATTTGTGAGTGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTTAGGATTATACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCAAATTGTCCACTTTGTAGAACAAGCATATCTTTAACAAGCAGATTCCAAATTGATCAGCTTCTAAACAGAACCACTATTTATTCTTCTCCTCAAGATCAAAACTCCAACATTGGTATTGACCAAGATTTTGTTGTCATTGAATTGGGCAATGATGATAATAATAGAAGCCAAAACAATGCTTTGGAGTTACCAACAACATGTCCTATTATTAGTCCTTCGCCAAGGAAGTTAGAGCAGAGAAAGAAATCAAGGAAGATGCATAATAAAGTGACAAGCATGGGAGATGAATGGATTGATATTAGAGCCAAAGATGAACAGTTTTCAGTGCAACCTATAAGGAGGTCTTTTTCAATGGACTCATCAGGGGATAGACACTACTATTTAGCAGTTCAAGAAGCATTGCAGCATCAGAATAAGCAAATTATTAATGAGTTTAACTCTACTGAAGGATGCAGTGGTAGTGGTAGAGTTAAAAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGAAGTTCTGTGCAACCTATTCATTTAGACCCTTGA 1077 0.3844 MDLVSKRYLIYSSSQAFSPITSQGSSSIFHPHMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSTRREDTSPIYSPATESRGLDEAVIRLIPLIQYKRQQEESSSSSSIGNREFGERSICECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFQIDQLLNRTTIYSSPQDQNSNIGIDQDFVVIELGNDDNNRSQNNALELPTTCPIISPSPRKLEQRKKSRKMHNKVTSMGDEWIDIRAKDEQFSVQPIRRSFSMDSSGDRHYYLAVQEALQHQNKQIINEFNSTEGCSGSGRVKRSFFSFGHGSRSRSSVQPIHLDP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0735 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 188 IPR013083 -
Lal12g0735 358 CDD RING-H2_PA-TM-RING 140 183 - -
Lal12g0735 358 Pfam Ring finger domain 140 183 IPR001841 -
Lal12g0735 358 PANTHER RING-H2 FINGER PROTEIN ATL16 16 357 - -
Lal12g0735 358 SMART ring_2 141 182 IPR001841 -
Lal12g0735 358 SUPERFAMILY RING/U-box 140 189 - -
Lal12g0735 358 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Lal12g0735 358 PANTHER RING-H2 FINGER PROTEIN ATL16 16 357 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0735 Lal-Chr12 5581458 5582534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0735 31 358 C3H Transcription Factor Family AT1G04360 50.139 7.16e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0735 - - gmx:100775286 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0735 12 5581458 5582534 Lal13g0852 13 5810788 5811711 LSH
Lal12g0735 12 5581458 5582534 Lal24g0524 24 3679273 3680154 LSH