Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0734 ATGGAGGATCACCACCAGAAGGGGAAGCAGAGTAGGGAGGAGGAGGTGAAGTACCGAGGCGTTCGAAGGCGGCCGTGGGGGAAGTATGCGGCAGAGATAAGAGATCCATCAAAGCCAGGGACAAGGCTATGGTTGGGGACATTTGATACAGCTGAAGAAGCAGCTAGGGCTTATGATAGGGCAGCCTTTAACTTAAGGGGTCATCTTGCAATTCTCAATTTTCCTAATGAATACTATTCTAAAATAAGAGGCTCACCACCTTATCCACCTCATTTAGCATCACCCACCTCTTCTTCTTTTCATGCAAGTGGTAGTGGCAATTCTTCTTCTGGTTCACAACATAGGCATGTTTTTGAGTTTGAGTATTTGGATGATAAGGTTTTGGAAGATCTTCTTGAGTTAGAGGAGCTGAAGAAGAAAAAGAAAGGAGATTGA 435 0.4483 MEDHHQKGKQSREEEVKYRGVRRRPWGKYAAEIRDPSKPGTRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPNEYYSKIRGSPPYPPHLASPTSSSFHASGSGNSSSGSQHRHVFEFEYLDDKVLEDLLELEELKKKKKGD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0734 144 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Lal12g0734 144 PANTHER ETHYLENE RESPONSE FACTOR 4 136 - -
Lal12g0734 144 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Lal12g0734 144 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Lal12g0734 144 MobiDBLite consensus disorder prediction 84 112 - -
Lal12g0734 144 MobiDBLite consensus disorder prediction 1 20 - -
Lal12g0734 144 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Lal12g0734 144 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lal12g0734 144 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Lal12g0734 144 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Lal12g0734 144 PANTHER DNA-BINDING DOMAIN 4 136 IPR044808 GO:0003700|GO:0009873
Lal12g0734 144 MobiDBLite consensus disorder prediction 94 112 - -
Lal12g0734 144 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0734 Lal-Chr12 5569926 5570652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0734 13 139 AP2-EREBP Transcription Factor Family AT3G23230 68.504 1.16e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal12g0734 AP2 1e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0734 12 5569926 5570652 Lal13g0851 13 5807276 5807686 LSH