Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0733 ATGGATTCCTCTTCCATTTTCTACTCACCCAACTCCAACATCTCTTATGAATCCTCTTACTTCAGTTCACCAGAGTCGTTCTCATTGAACTACCAGAATGATTACCTTCCGTTCAATGAGAACGACTCTGAAGAGATGTTTCTCTATGGCATGATTGCCAACGCCAATATTCCCCAACAACCCTTCCACATCACTAACATGGTGAAGGAAGAGGAGGTGAGTTACGGGGAATATGGCGATAGCACGAGGAAGGAGAAGTCGTATCGAGGTGTCAGGAGGAGGCCATGGGGAAAGTTTGCGGCCGAGATAAGAGACTCAACTAGAAATGGCATAAGGGTGTGGTTGGGAACATTTGATAGTGCAGAAGCAGCAGCTTTGGCTTATGATCAAGCTTCTTTTTCCATGAGAGGCTCTGCTGCCATACTCAACTTCCCTGTTGAGACAGTGAAGGATTCACTTAAGGAAATGAATTATGGGTCTGAAGATGGGTGCTCCCCTGTTGTTGCTCTCAAAAAGAAGAACTCATTGAGAAGGAAAATGGGTGTCAAGAAGAATATAGATTGTGATGTTAGGATAAACAATGCACTGGTGTTTGAAGATCTAGGTGCTGATTATTTAGACCAATTGTTGTTGTTGTGTGATGAAATTCCTAATCCTTGTTCAATTATCAATTAA 675 0.4267 MDSSSIFYSPNSNISYESSYFSSPESFSLNYQNDYLPFNENDSEEMFLYGMIANANIPQQPFHITNMVKEEEVSYGEYGDSTRKEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFDSAEAAALAYDQASFSMRGSAAILNFPVETVKDSLKEMNYGSEDGCSPVVALKKKNSLRRKMGVKKNIDCDVRINNALVFEDLGADYLDQLLLLCDEIPNPCSIIN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0733 224 PANTHER DNA-BINDING DOMAIN 27 212 IPR044808 GO:0003700|GO:0009873
Lal12g0733 224 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
Lal12g0733 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 212 - -
Lal12g0733 224 CDD AP2 86 146 IPR001471 GO:0003700|GO:0006355
Lal12g0733 224 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Lal12g0733 224 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Lal12g0733 224 SUPERFAMILY DNA-binding domain 87 147 IPR016177 GO:0003677
Lal12g0733 224 Pfam AP2 domain 87 137 IPR001471 GO:0003700|GO:0006355
Lal12g0733 224 Gene3D AP2/ERF domain 86 147 IPR036955 GO:0003700|GO:0006355
Lal12g0733 224 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0733 Lal-Chr12 5555829 5556503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0733 36 210 AP2-EREBP Transcription Factor Family AT3G23240 62.778 6.15e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal12g0733 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0733 K14516 - jre:109007057 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0733 12 5555829 5556503 Lal13g0846 13 5791537 5792184 LSH